/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_0 -s FAM94162_pass_d533fdd7_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_100 -s FAM94162_pass_d533fdd7_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_101 -s FAM94162_pass_d533fdd7_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_102 -s FAM94162_pass_d533fdd7_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_103 -s FAM94162_pass_d533fdd7_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_104 -s FAM94162_pass_d533fdd7_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_105 -s FAM94162_pass_d533fdd7_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_106 -s FAM94162_pass_d533fdd7_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_107 -s FAM94162_pass_d533fdd7_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_108 -s FAM94162_pass_d533fdd7_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_109 -s FAM94162_pass_d533fdd7_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_10 -s FAM94162_pass_d533fdd7_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_110 -s FAM94162_pass_d533fdd7_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_111 -s FAM94162_pass_d533fdd7_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_112 -s FAM94162_pass_d533fdd7_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_113 -s FAM94162_pass_d533fdd7_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_114 -s FAM94162_pass_d533fdd7_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_115 -s FAM94162_pass_d533fdd7_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_116 -s FAM94162_pass_d533fdd7_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_117 -s FAM94162_pass_d533fdd7_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_118 -s FAM94162_pass_d533fdd7_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_119 -s FAM94162_pass_d533fdd7_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_11 -s FAM94162_pass_d533fdd7_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_120 -s FAM94162_pass_d533fdd7_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_121 -s FAM94162_pass_d533fdd7_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_122 -s FAM94162_pass_d533fdd7_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_123 -s FAM94162_pass_d533fdd7_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_124 -s FAM94162_pass_d533fdd7_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_125 -s FAM94162_pass_d533fdd7_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_126 -s FAM94162_pass_d533fdd7_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_127 -s FAM94162_pass_d533fdd7_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_128 -s FAM94162_pass_d533fdd7_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_129 -s FAM94162_pass_d533fdd7_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_12 -s FAM94162_pass_d533fdd7_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_130 -s FAM94162_pass_d533fdd7_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_131 -s FAM94162_pass_d533fdd7_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_132 -s FAM94162_pass_d533fdd7_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_133 -s FAM94162_pass_d533fdd7_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_134 -s FAM94162_pass_d533fdd7_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_135 -s FAM94162_pass_d533fdd7_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_136 -s FAM94162_pass_d533fdd7_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_137 -s FAM94162_pass_d533fdd7_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_138 -s FAM94162_pass_d533fdd7_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_139 -s FAM94162_pass_d533fdd7_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_13 -s FAM94162_pass_d533fdd7_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_140 -s FAM94162_pass_d533fdd7_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_141 -s FAM94162_pass_d533fdd7_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_142 -s FAM94162_pass_d533fdd7_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_143 -s FAM94162_pass_d533fdd7_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_144 -s FAM94162_pass_d533fdd7_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_145 -s FAM94162_pass_d533fdd7_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_146 -s FAM94162_pass_d533fdd7_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_147 -s FAM94162_pass_d533fdd7_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_148 -s FAM94162_pass_d533fdd7_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_149 -s FAM94162_pass_d533fdd7_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_14 -s FAM94162_pass_d533fdd7_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_150 -s FAM94162_pass_d533fdd7_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_151 -s FAM94162_pass_d533fdd7_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_152 -s FAM94162_pass_d533fdd7_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_153 -s FAM94162_pass_d533fdd7_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_154 -s FAM94162_pass_d533fdd7_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_155 -s FAM94162_pass_d533fdd7_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_156 -s FAM94162_pass_d533fdd7_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_157 -s FAM94162_pass_d533fdd7_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_158 -s FAM94162_pass_d533fdd7_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_159 -s FAM94162_pass_d533fdd7_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_15 -s FAM94162_pass_d533fdd7_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_160 -s FAM94162_pass_d533fdd7_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_161 -s FAM94162_pass_d533fdd7_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_162 -s FAM94162_pass_d533fdd7_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_163 -s FAM94162_pass_d533fdd7_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_164 -s FAM94162_pass_d533fdd7_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_165 -s FAM94162_pass_d533fdd7_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_166 -s FAM94162_pass_d533fdd7_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_167 -s FAM94162_pass_d533fdd7_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_168 -s FAM94162_pass_d533fdd7_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_169 -s FAM94162_pass_d533fdd7_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_16 -s FAM94162_pass_d533fdd7_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_170 -s FAM94162_pass_d533fdd7_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_171 -s FAM94162_pass_d533fdd7_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_172 -s FAM94162_pass_d533fdd7_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_173 -s FAM94162_pass_d533fdd7_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_174 -s FAM94162_pass_d533fdd7_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_175 -s FAM94162_pass_d533fdd7_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_176 -s FAM94162_pass_d533fdd7_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_177 -s FAM94162_pass_d533fdd7_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_178 -s FAM94162_pass_d533fdd7_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_179 -s FAM94162_pass_d533fdd7_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_17 -s FAM94162_pass_d533fdd7_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_180 -s FAM94162_pass_d533fdd7_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_181 -s FAM94162_pass_d533fdd7_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_182 -s FAM94162_pass_d533fdd7_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_183 -s FAM94162_pass_d533fdd7_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_184 -s FAM94162_pass_d533fdd7_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_185 -s FAM94162_pass_d533fdd7_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_186 -s FAM94162_pass_d533fdd7_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_187 -s FAM94162_pass_d533fdd7_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_188 -s FAM94162_pass_d533fdd7_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_189 -s FAM94162_pass_d533fdd7_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_18 -s FAM94162_pass_d533fdd7_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_190 -s FAM94162_pass_d533fdd7_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_191 -s FAM94162_pass_d533fdd7_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_192 -s FAM94162_pass_d533fdd7_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_193 -s FAM94162_pass_d533fdd7_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_194 -s FAM94162_pass_d533fdd7_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_195 -s FAM94162_pass_d533fdd7_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_196 -s FAM94162_pass_d533fdd7_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_197 -s FAM94162_pass_d533fdd7_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_198 -s FAM94162_pass_d533fdd7_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_199 -s FAM94162_pass_d533fdd7_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_19 -s FAM94162_pass_d533fdd7_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_1 -s FAM94162_pass_d533fdd7_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_200 -s FAM94162_pass_d533fdd7_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_201 -s FAM94162_pass_d533fdd7_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_202 -s FAM94162_pass_d533fdd7_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_203 -s FAM94162_pass_d533fdd7_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_204 -s FAM94162_pass_d533fdd7_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_205 -s FAM94162_pass_d533fdd7_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_206 -s FAM94162_pass_d533fdd7_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_207 -s FAM94162_pass_d533fdd7_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_208 -s FAM94162_pass_d533fdd7_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_209 -s FAM94162_pass_d533fdd7_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_20 -s FAM94162_pass_d533fdd7_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_210 -s FAM94162_pass_d533fdd7_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_211 -s FAM94162_pass_d533fdd7_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_212 -s FAM94162_pass_d533fdd7_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_213 -s FAM94162_pass_d533fdd7_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_214 -s FAM94162_pass_d533fdd7_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_215 -s FAM94162_pass_d533fdd7_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_216 -s FAM94162_pass_d533fdd7_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_217 -s FAM94162_pass_d533fdd7_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_218 -s FAM94162_pass_d533fdd7_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_219 -s FAM94162_pass_d533fdd7_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_21 -s FAM94162_pass_d533fdd7_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_220 -s FAM94162_pass_d533fdd7_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_221 -s FAM94162_pass_d533fdd7_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_222 -s FAM94162_pass_d533fdd7_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_223 -s FAM94162_pass_d533fdd7_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_224 -s FAM94162_pass_d533fdd7_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_225 -s FAM94162_pass_d533fdd7_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_226 -s FAM94162_pass_d533fdd7_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_227 -s FAM94162_pass_d533fdd7_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_228 -s FAM94162_pass_d533fdd7_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_229 -s FAM94162_pass_d533fdd7_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_22 -s FAM94162_pass_d533fdd7_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_230 -s FAM94162_pass_d533fdd7_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_231 -s FAM94162_pass_d533fdd7_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_232 -s FAM94162_pass_d533fdd7_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_233 -s FAM94162_pass_d533fdd7_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_234 -s FAM94162_pass_d533fdd7_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_235 -s FAM94162_pass_d533fdd7_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_236 -s FAM94162_pass_d533fdd7_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_237 -s FAM94162_pass_d533fdd7_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_238 -s FAM94162_pass_d533fdd7_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_239 -s FAM94162_pass_d533fdd7_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_23 -s FAM94162_pass_d533fdd7_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_240 -s FAM94162_pass_d533fdd7_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_241 -s FAM94162_pass_d533fdd7_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_242 -s FAM94162_pass_d533fdd7_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_243 -s FAM94162_pass_d533fdd7_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_244 -s FAM94162_pass_d533fdd7_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_245 -s FAM94162_pass_d533fdd7_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_246 -s FAM94162_pass_d533fdd7_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_247 -s FAM94162_pass_d533fdd7_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_248 -s FAM94162_pass_d533fdd7_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_249 -s FAM94162_pass_d533fdd7_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_24 -s FAM94162_pass_d533fdd7_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_250 -s FAM94162_pass_d533fdd7_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_251 -s FAM94162_pass_d533fdd7_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_252 -s FAM94162_pass_d533fdd7_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_253 -s FAM94162_pass_d533fdd7_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_254 -s FAM94162_pass_d533fdd7_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_255 -s FAM94162_pass_d533fdd7_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_256 -s FAM94162_pass_d533fdd7_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_257 -s FAM94162_pass_d533fdd7_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_258 -s FAM94162_pass_d533fdd7_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_259 -s FAM94162_pass_d533fdd7_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_25 -s FAM94162_pass_d533fdd7_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_260 -s FAM94162_pass_d533fdd7_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_261 -s FAM94162_pass_d533fdd7_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_262 -s FAM94162_pass_d533fdd7_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_263 -s FAM94162_pass_d533fdd7_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_264 -s FAM94162_pass_d533fdd7_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_265 -s FAM94162_pass_d533fdd7_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_266 -s FAM94162_pass_d533fdd7_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_267 -s FAM94162_pass_d533fdd7_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_268 -s FAM94162_pass_d533fdd7_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_269 -s FAM94162_pass_d533fdd7_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_26 -s FAM94162_pass_d533fdd7_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_270 -s FAM94162_pass_d533fdd7_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_271 -s FAM94162_pass_d533fdd7_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_272 -s FAM94162_pass_d533fdd7_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_273 -s FAM94162_pass_d533fdd7_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_274 -s FAM94162_pass_d533fdd7_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_275 -s FAM94162_pass_d533fdd7_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_276 -s FAM94162_pass_d533fdd7_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_277 -s FAM94162_pass_d533fdd7_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_278 -s FAM94162_pass_d533fdd7_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_279 -s FAM94162_pass_d533fdd7_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_27 -s FAM94162_pass_d533fdd7_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_280 -s FAM94162_pass_d533fdd7_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_281 -s FAM94162_pass_d533fdd7_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_282 -s FAM94162_pass_d533fdd7_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_283 -s FAM94162_pass_d533fdd7_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_284 -s FAM94162_pass_d533fdd7_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_285 -s FAM94162_pass_d533fdd7_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_286 -s FAM94162_pass_d533fdd7_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_287 -s FAM94162_pass_d533fdd7_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_288 -s FAM94162_pass_d533fdd7_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_289 -s FAM94162_pass_d533fdd7_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_28 -s FAM94162_pass_d533fdd7_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_290 -s FAM94162_pass_d533fdd7_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_291 -s FAM94162_pass_d533fdd7_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_292 -s FAM94162_pass_d533fdd7_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_293 -s FAM94162_pass_d533fdd7_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_294 -s FAM94162_pass_d533fdd7_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_295 -s FAM94162_pass_d533fdd7_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_296 -s FAM94162_pass_d533fdd7_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_297 -s FAM94162_pass_d533fdd7_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_298 -s FAM94162_pass_d533fdd7_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_299 -s FAM94162_pass_d533fdd7_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_29 -s FAM94162_pass_d533fdd7_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_2 -s FAM94162_pass_d533fdd7_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_300 -s FAM94162_pass_d533fdd7_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_301 -s FAM94162_pass_d533fdd7_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_302 -s FAM94162_pass_d533fdd7_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_303 -s FAM94162_pass_d533fdd7_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_304 -s FAM94162_pass_d533fdd7_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_305 -s FAM94162_pass_d533fdd7_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_306 -s FAM94162_pass_d533fdd7_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_307 -s FAM94162_pass_d533fdd7_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_308 -s FAM94162_pass_d533fdd7_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_309 -s FAM94162_pass_d533fdd7_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_30 -s FAM94162_pass_d533fdd7_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_310 -s FAM94162_pass_d533fdd7_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_311 -s FAM94162_pass_d533fdd7_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_312 -s FAM94162_pass_d533fdd7_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_313 -s FAM94162_pass_d533fdd7_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_314 -s FAM94162_pass_d533fdd7_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_315 -s FAM94162_pass_d533fdd7_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_316 -s FAM94162_pass_d533fdd7_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_317 -s FAM94162_pass_d533fdd7_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_318 -s FAM94162_pass_d533fdd7_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_319 -s FAM94162_pass_d533fdd7_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_31 -s FAM94162_pass_d533fdd7_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_320 -s FAM94162_pass_d533fdd7_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_321 -s FAM94162_pass_d533fdd7_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_322 -s FAM94162_pass_d533fdd7_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_323 -s FAM94162_pass_d533fdd7_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_324 -s FAM94162_pass_d533fdd7_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_325 -s FAM94162_pass_d533fdd7_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_326 -s FAM94162_pass_d533fdd7_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_327 -s FAM94162_pass_d533fdd7_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_328 -s FAM94162_pass_d533fdd7_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_329 -s FAM94162_pass_d533fdd7_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_32 -s FAM94162_pass_d533fdd7_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_330 -s FAM94162_pass_d533fdd7_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_331 -s FAM94162_pass_d533fdd7_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_332 -s FAM94162_pass_d533fdd7_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_333 -s FAM94162_pass_d533fdd7_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_334 -s FAM94162_pass_d533fdd7_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_335 -s FAM94162_pass_d533fdd7_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_336 -s FAM94162_pass_d533fdd7_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_337 -s FAM94162_pass_d533fdd7_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_338 -s FAM94162_pass_d533fdd7_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_339 -s FAM94162_pass_d533fdd7_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_33 -s FAM94162_pass_d533fdd7_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_340 -s FAM94162_pass_d533fdd7_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_341 -s FAM94162_pass_d533fdd7_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_342 -s FAM94162_pass_d533fdd7_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_343 -s FAM94162_pass_d533fdd7_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_344 -s FAM94162_pass_d533fdd7_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_345 -s FAM94162_pass_d533fdd7_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_346 -s FAM94162_pass_d533fdd7_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_347 -s FAM94162_pass_d533fdd7_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_348 -s FAM94162_pass_d533fdd7_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_349 -s FAM94162_pass_d533fdd7_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_34 -s FAM94162_pass_d533fdd7_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_350 -s FAM94162_pass_d533fdd7_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_351 -s FAM94162_pass_d533fdd7_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_352 -s FAM94162_pass_d533fdd7_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_353 -s FAM94162_pass_d533fdd7_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_354 -s FAM94162_pass_d533fdd7_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_355 -s FAM94162_pass_d533fdd7_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_356 -s FAM94162_pass_d533fdd7_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_357 -s FAM94162_pass_d533fdd7_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_358 -s FAM94162_pass_d533fdd7_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_359 -s FAM94162_pass_d533fdd7_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_35 -s FAM94162_pass_d533fdd7_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_360 -s FAM94162_pass_d533fdd7_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_361 -s FAM94162_pass_d533fdd7_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_362 -s FAM94162_pass_d533fdd7_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_363 -s FAM94162_pass_d533fdd7_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_364 -s FAM94162_pass_d533fdd7_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_365 -s FAM94162_pass_d533fdd7_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_366 -s FAM94162_pass_d533fdd7_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_367 -s FAM94162_pass_d533fdd7_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_368 -s FAM94162_pass_d533fdd7_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_369 -s FAM94162_pass_d533fdd7_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_36 -s FAM94162_pass_d533fdd7_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_370 -s FAM94162_pass_d533fdd7_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_371 -s FAM94162_pass_d533fdd7_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_372 -s FAM94162_pass_d533fdd7_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_373 -s FAM94162_pass_d533fdd7_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_374 -s FAM94162_pass_d533fdd7_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_375 -s FAM94162_pass_d533fdd7_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_376 -s FAM94162_pass_d533fdd7_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_377 -s FAM94162_pass_d533fdd7_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_378 -s FAM94162_pass_d533fdd7_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_379 -s FAM94162_pass_d533fdd7_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_37 -s FAM94162_pass_d533fdd7_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_380 -s FAM94162_pass_d533fdd7_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_381 -s FAM94162_pass_d533fdd7_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_382 -s FAM94162_pass_d533fdd7_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_383 -s FAM94162_pass_d533fdd7_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_384 -s FAM94162_pass_d533fdd7_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_385 -s FAM94162_pass_d533fdd7_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_386 -s FAM94162_pass_d533fdd7_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_387 -s FAM94162_pass_d533fdd7_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_388 -s FAM94162_pass_d533fdd7_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_389 -s FAM94162_pass_d533fdd7_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_38 -s FAM94162_pass_d533fdd7_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_390 -s FAM94162_pass_d533fdd7_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_391 -s FAM94162_pass_d533fdd7_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_392 -s FAM94162_pass_d533fdd7_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_393 -s FAM94162_pass_d533fdd7_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_394 -s FAM94162_pass_d533fdd7_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_395 -s FAM94162_pass_d533fdd7_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_396 -s FAM94162_pass_d533fdd7_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_397 -s FAM94162_pass_d533fdd7_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_398 -s FAM94162_pass_d533fdd7_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_399 -s FAM94162_pass_d533fdd7_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_39 -s FAM94162_pass_d533fdd7_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_3 -s FAM94162_pass_d533fdd7_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_400 -s FAM94162_pass_d533fdd7_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_401 -s FAM94162_pass_d533fdd7_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_402 -s FAM94162_pass_d533fdd7_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_403 -s FAM94162_pass_d533fdd7_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_404 -s FAM94162_pass_d533fdd7_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_405 -s FAM94162_pass_d533fdd7_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_406 -s FAM94162_pass_d533fdd7_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_407 -s FAM94162_pass_d533fdd7_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_408 -s FAM94162_pass_d533fdd7_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_409 -s FAM94162_pass_d533fdd7_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_40 -s FAM94162_pass_d533fdd7_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_410 -s FAM94162_pass_d533fdd7_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_411 -s FAM94162_pass_d533fdd7_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_412 -s FAM94162_pass_d533fdd7_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_41 -s FAM94162_pass_d533fdd7_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_42 -s FAM94162_pass_d533fdd7_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_43 -s FAM94162_pass_d533fdd7_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_44 -s FAM94162_pass_d533fdd7_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_45 -s FAM94162_pass_d533fdd7_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_46 -s FAM94162_pass_d533fdd7_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_47 -s FAM94162_pass_d533fdd7_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_48 -s FAM94162_pass_d533fdd7_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_49 -s FAM94162_pass_d533fdd7_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_4 -s FAM94162_pass_d533fdd7_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_50 -s FAM94162_pass_d533fdd7_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_51 -s FAM94162_pass_d533fdd7_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_52 -s FAM94162_pass_d533fdd7_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_53 -s FAM94162_pass_d533fdd7_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_54 -s FAM94162_pass_d533fdd7_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_55 -s FAM94162_pass_d533fdd7_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_56 -s FAM94162_pass_d533fdd7_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_57 -s FAM94162_pass_d533fdd7_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_58 -s FAM94162_pass_d533fdd7_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_59 -s FAM94162_pass_d533fdd7_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_5 -s FAM94162_pass_d533fdd7_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_60 -s FAM94162_pass_d533fdd7_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_61 -s FAM94162_pass_d533fdd7_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_62 -s FAM94162_pass_d533fdd7_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_63 -s FAM94162_pass_d533fdd7_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_64 -s FAM94162_pass_d533fdd7_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_65 -s FAM94162_pass_d533fdd7_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_66 -s FAM94162_pass_d533fdd7_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_67 -s FAM94162_pass_d533fdd7_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_68 -s FAM94162_pass_d533fdd7_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_69 -s FAM94162_pass_d533fdd7_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_6 -s FAM94162_pass_d533fdd7_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_70 -s FAM94162_pass_d533fdd7_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_71 -s FAM94162_pass_d533fdd7_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_72 -s FAM94162_pass_d533fdd7_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_73 -s FAM94162_pass_d533fdd7_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_74 -s FAM94162_pass_d533fdd7_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_75 -s FAM94162_pass_d533fdd7_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_76 -s FAM94162_pass_d533fdd7_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_77 -s FAM94162_pass_d533fdd7_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_78 -s FAM94162_pass_d533fdd7_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_79 -s FAM94162_pass_d533fdd7_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_7 -s FAM94162_pass_d533fdd7_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_80 -s FAM94162_pass_d533fdd7_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_81 -s FAM94162_pass_d533fdd7_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_82 -s FAM94162_pass_d533fdd7_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_83 -s FAM94162_pass_d533fdd7_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_84 -s FAM94162_pass_d533fdd7_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_85 -s FAM94162_pass_d533fdd7_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_86 -s FAM94162_pass_d533fdd7_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_87 -s FAM94162_pass_d533fdd7_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_88 -s FAM94162_pass_d533fdd7_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_89 -s FAM94162_pass_d533fdd7_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_8 -s FAM94162_pass_d533fdd7_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_90 -s FAM94162_pass_d533fdd7_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_91 -s FAM94162_pass_d533fdd7_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_92 -s FAM94162_pass_d533fdd7_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_93 -s FAM94162_pass_d533fdd7_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_94 -s FAM94162_pass_d533fdd7_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_95 -s FAM94162_pass_d533fdd7_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_96 -s FAM94162_pass_d533fdd7_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_97 -s FAM94162_pass_d533fdd7_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_98 -s FAM94162_pass_d533fdd7_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_99 -s FAM94162_pass_d533fdd7_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM94162_pass_d533fdd7_9 -s FAM94162_pass_d533fdd7_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_0 -s FAM96346_pass_c77267c3_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_100 -s FAM96346_pass_c77267c3_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_101 -s FAM96346_pass_c77267c3_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_102 -s FAM96346_pass_c77267c3_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_103 -s FAM96346_pass_c77267c3_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_104 -s FAM96346_pass_c77267c3_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_105 -s FAM96346_pass_c77267c3_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_106 -s FAM96346_pass_c77267c3_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_107 -s FAM96346_pass_c77267c3_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_108 -s FAM96346_pass_c77267c3_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_109 -s FAM96346_pass_c77267c3_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_10 -s FAM96346_pass_c77267c3_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_110 -s FAM96346_pass_c77267c3_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_111 -s FAM96346_pass_c77267c3_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_112 -s FAM96346_pass_c77267c3_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_113 -s FAM96346_pass_c77267c3_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_114 -s FAM96346_pass_c77267c3_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_115 -s FAM96346_pass_c77267c3_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_116 -s FAM96346_pass_c77267c3_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_117 -s FAM96346_pass_c77267c3_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_118 -s FAM96346_pass_c77267c3_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_119 -s FAM96346_pass_c77267c3_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_11 -s FAM96346_pass_c77267c3_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_120 -s FAM96346_pass_c77267c3_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_121 -s FAM96346_pass_c77267c3_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_122 -s FAM96346_pass_c77267c3_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_123 -s FAM96346_pass_c77267c3_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_124 -s FAM96346_pass_c77267c3_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_125 -s FAM96346_pass_c77267c3_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_126 -s FAM96346_pass_c77267c3_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_127 -s FAM96346_pass_c77267c3_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_128 -s FAM96346_pass_c77267c3_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_129 -s FAM96346_pass_c77267c3_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_12 -s FAM96346_pass_c77267c3_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_130 -s FAM96346_pass_c77267c3_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_131 -s FAM96346_pass_c77267c3_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_132 -s FAM96346_pass_c77267c3_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_133 -s FAM96346_pass_c77267c3_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_134 -s FAM96346_pass_c77267c3_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_135 -s FAM96346_pass_c77267c3_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_136 -s FAM96346_pass_c77267c3_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_137 -s FAM96346_pass_c77267c3_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_138 -s FAM96346_pass_c77267c3_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_139 -s FAM96346_pass_c77267c3_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_13 -s FAM96346_pass_c77267c3_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_140 -s FAM96346_pass_c77267c3_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_141 -s FAM96346_pass_c77267c3_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_142 -s FAM96346_pass_c77267c3_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_143 -s FAM96346_pass_c77267c3_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_144 -s FAM96346_pass_c77267c3_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_145 -s FAM96346_pass_c77267c3_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_146 -s FAM96346_pass_c77267c3_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_147 -s FAM96346_pass_c77267c3_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_148 -s FAM96346_pass_c77267c3_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_149 -s FAM96346_pass_c77267c3_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_14 -s FAM96346_pass_c77267c3_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_150 -s FAM96346_pass_c77267c3_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_151 -s FAM96346_pass_c77267c3_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_152 -s FAM96346_pass_c77267c3_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_153 -s FAM96346_pass_c77267c3_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_154 -s FAM96346_pass_c77267c3_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_155 -s FAM96346_pass_c77267c3_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_156 -s FAM96346_pass_c77267c3_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_157 -s FAM96346_pass_c77267c3_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_158 -s FAM96346_pass_c77267c3_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_159 -s FAM96346_pass_c77267c3_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_15 -s FAM96346_pass_c77267c3_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_160 -s FAM96346_pass_c77267c3_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_161 -s FAM96346_pass_c77267c3_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_162 -s FAM96346_pass_c77267c3_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_163 -s FAM96346_pass_c77267c3_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_164 -s FAM96346_pass_c77267c3_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_165 -s FAM96346_pass_c77267c3_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_166 -s FAM96346_pass_c77267c3_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_167 -s FAM96346_pass_c77267c3_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_168 -s FAM96346_pass_c77267c3_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_169 -s FAM96346_pass_c77267c3_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_16 -s FAM96346_pass_c77267c3_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_170 -s FAM96346_pass_c77267c3_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_171 -s FAM96346_pass_c77267c3_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_172 -s FAM96346_pass_c77267c3_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_173 -s FAM96346_pass_c77267c3_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_174 -s FAM96346_pass_c77267c3_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_175 -s FAM96346_pass_c77267c3_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_176 -s FAM96346_pass_c77267c3_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_177 -s FAM96346_pass_c77267c3_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_178 -s FAM96346_pass_c77267c3_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_179 -s FAM96346_pass_c77267c3_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_17 -s FAM96346_pass_c77267c3_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_180 -s FAM96346_pass_c77267c3_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_181 -s FAM96346_pass_c77267c3_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_182 -s FAM96346_pass_c77267c3_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_183 -s FAM96346_pass_c77267c3_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_184 -s FAM96346_pass_c77267c3_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_185 -s FAM96346_pass_c77267c3_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_186 -s FAM96346_pass_c77267c3_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_187 -s FAM96346_pass_c77267c3_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_188 -s FAM96346_pass_c77267c3_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_189 -s FAM96346_pass_c77267c3_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_18 -s FAM96346_pass_c77267c3_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_190 -s FAM96346_pass_c77267c3_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_191 -s FAM96346_pass_c77267c3_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_192 -s FAM96346_pass_c77267c3_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_193 -s FAM96346_pass_c77267c3_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_194 -s FAM96346_pass_c77267c3_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_195 -s FAM96346_pass_c77267c3_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_196 -s FAM96346_pass_c77267c3_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_197 -s FAM96346_pass_c77267c3_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_198 -s FAM96346_pass_c77267c3_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_199 -s FAM96346_pass_c77267c3_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_19 -s FAM96346_pass_c77267c3_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_1 -s FAM96346_pass_c77267c3_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_200 -s FAM96346_pass_c77267c3_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_201 -s FAM96346_pass_c77267c3_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_202 -s FAM96346_pass_c77267c3_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_203 -s FAM96346_pass_c77267c3_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_204 -s FAM96346_pass_c77267c3_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_205 -s FAM96346_pass_c77267c3_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_206 -s FAM96346_pass_c77267c3_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_207 -s FAM96346_pass_c77267c3_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_208 -s FAM96346_pass_c77267c3_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_209 -s FAM96346_pass_c77267c3_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_20 -s FAM96346_pass_c77267c3_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_210 -s FAM96346_pass_c77267c3_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_211 -s FAM96346_pass_c77267c3_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_212 -s FAM96346_pass_c77267c3_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_213 -s FAM96346_pass_c77267c3_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_214 -s FAM96346_pass_c77267c3_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_215 -s FAM96346_pass_c77267c3_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_216 -s FAM96346_pass_c77267c3_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_217 -s FAM96346_pass_c77267c3_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_218 -s FAM96346_pass_c77267c3_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_219 -s FAM96346_pass_c77267c3_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_21 -s FAM96346_pass_c77267c3_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_220 -s FAM96346_pass_c77267c3_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_221 -s FAM96346_pass_c77267c3_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_222 -s FAM96346_pass_c77267c3_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_223 -s FAM96346_pass_c77267c3_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_224 -s FAM96346_pass_c77267c3_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_225 -s FAM96346_pass_c77267c3_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_226 -s FAM96346_pass_c77267c3_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_227 -s FAM96346_pass_c77267c3_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_228 -s FAM96346_pass_c77267c3_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_229 -s FAM96346_pass_c77267c3_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_22 -s FAM96346_pass_c77267c3_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_230 -s FAM96346_pass_c77267c3_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_231 -s FAM96346_pass_c77267c3_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_232 -s FAM96346_pass_c77267c3_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_233 -s FAM96346_pass_c77267c3_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_234 -s FAM96346_pass_c77267c3_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_235 -s FAM96346_pass_c77267c3_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_236 -s FAM96346_pass_c77267c3_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_237 -s FAM96346_pass_c77267c3_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_238 -s FAM96346_pass_c77267c3_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_239 -s FAM96346_pass_c77267c3_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_23 -s FAM96346_pass_c77267c3_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_240 -s FAM96346_pass_c77267c3_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_241 -s FAM96346_pass_c77267c3_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_242 -s FAM96346_pass_c77267c3_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_243 -s FAM96346_pass_c77267c3_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_244 -s FAM96346_pass_c77267c3_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_245 -s FAM96346_pass_c77267c3_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_246 -s FAM96346_pass_c77267c3_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_247 -s FAM96346_pass_c77267c3_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_248 -s FAM96346_pass_c77267c3_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_249 -s FAM96346_pass_c77267c3_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_24 -s FAM96346_pass_c77267c3_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_250 -s FAM96346_pass_c77267c3_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_251 -s FAM96346_pass_c77267c3_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_252 -s FAM96346_pass_c77267c3_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_253 -s FAM96346_pass_c77267c3_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_254 -s FAM96346_pass_c77267c3_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_255 -s FAM96346_pass_c77267c3_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_256 -s FAM96346_pass_c77267c3_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_257 -s FAM96346_pass_c77267c3_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_258 -s FAM96346_pass_c77267c3_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_259 -s FAM96346_pass_c77267c3_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_25 -s FAM96346_pass_c77267c3_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_26 -s FAM96346_pass_c77267c3_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_27 -s FAM96346_pass_c77267c3_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_28 -s FAM96346_pass_c77267c3_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_29 -s FAM96346_pass_c77267c3_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_2 -s FAM96346_pass_c77267c3_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_30 -s FAM96346_pass_c77267c3_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_31 -s FAM96346_pass_c77267c3_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_32 -s FAM96346_pass_c77267c3_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_33 -s FAM96346_pass_c77267c3_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_34 -s FAM96346_pass_c77267c3_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_35 -s FAM96346_pass_c77267c3_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_36 -s FAM96346_pass_c77267c3_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_37 -s FAM96346_pass_c77267c3_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_38 -s FAM96346_pass_c77267c3_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_39 -s FAM96346_pass_c77267c3_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_3 -s FAM96346_pass_c77267c3_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_40 -s FAM96346_pass_c77267c3_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_41 -s FAM96346_pass_c77267c3_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_42 -s FAM96346_pass_c77267c3_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_43 -s FAM96346_pass_c77267c3_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_44 -s FAM96346_pass_c77267c3_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_45 -s FAM96346_pass_c77267c3_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_46 -s FAM96346_pass_c77267c3_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_47 -s FAM96346_pass_c77267c3_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_48 -s FAM96346_pass_c77267c3_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_49 -s FAM96346_pass_c77267c3_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_4 -s FAM96346_pass_c77267c3_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_50 -s FAM96346_pass_c77267c3_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_51 -s FAM96346_pass_c77267c3_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_52 -s FAM96346_pass_c77267c3_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_53 -s FAM96346_pass_c77267c3_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_54 -s FAM96346_pass_c77267c3_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_55 -s FAM96346_pass_c77267c3_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_56 -s FAM96346_pass_c77267c3_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_57 -s FAM96346_pass_c77267c3_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_58 -s FAM96346_pass_c77267c3_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_59 -s FAM96346_pass_c77267c3_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_5 -s FAM96346_pass_c77267c3_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_60 -s FAM96346_pass_c77267c3_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_61 -s FAM96346_pass_c77267c3_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_62 -s FAM96346_pass_c77267c3_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_63 -s FAM96346_pass_c77267c3_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_64 -s FAM96346_pass_c77267c3_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_65 -s FAM96346_pass_c77267c3_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_66 -s FAM96346_pass_c77267c3_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_67 -s FAM96346_pass_c77267c3_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_68 -s FAM96346_pass_c77267c3_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_69 -s FAM96346_pass_c77267c3_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_6 -s FAM96346_pass_c77267c3_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_70 -s FAM96346_pass_c77267c3_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_71 -s FAM96346_pass_c77267c3_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_72 -s FAM96346_pass_c77267c3_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_73 -s FAM96346_pass_c77267c3_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_74 -s FAM96346_pass_c77267c3_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_75 -s FAM96346_pass_c77267c3_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_76 -s FAM96346_pass_c77267c3_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_77 -s FAM96346_pass_c77267c3_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_78 -s FAM96346_pass_c77267c3_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_79 -s FAM96346_pass_c77267c3_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_7 -s FAM96346_pass_c77267c3_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_80 -s FAM96346_pass_c77267c3_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_81 -s FAM96346_pass_c77267c3_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_82 -s FAM96346_pass_c77267c3_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_83 -s FAM96346_pass_c77267c3_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_84 -s FAM96346_pass_c77267c3_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_85 -s FAM96346_pass_c77267c3_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_86 -s FAM96346_pass_c77267c3_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_87 -s FAM96346_pass_c77267c3_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_88 -s FAM96346_pass_c77267c3_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_89 -s FAM96346_pass_c77267c3_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_8 -s FAM96346_pass_c77267c3_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_90 -s FAM96346_pass_c77267c3_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_91 -s FAM96346_pass_c77267c3_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_92 -s FAM96346_pass_c77267c3_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_93 -s FAM96346_pass_c77267c3_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_94 -s FAM96346_pass_c77267c3_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_95 -s FAM96346_pass_c77267c3_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_96 -s FAM96346_pass_c77267c3_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_97 -s FAM96346_pass_c77267c3_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_98 -s FAM96346_pass_c77267c3_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_99 -s FAM96346_pass_c77267c3_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAM96346_pass_c77267c3_9 -s FAM96346_pass_c77267c3_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_0 -s FAP84430_pass_1c0cb450_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_100 -s FAP84430_pass_1c0cb450_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_101 -s FAP84430_pass_1c0cb450_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_102 -s FAP84430_pass_1c0cb450_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_103 -s FAP84430_pass_1c0cb450_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_104 -s FAP84430_pass_1c0cb450_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_105 -s FAP84430_pass_1c0cb450_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_106 -s FAP84430_pass_1c0cb450_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_107 -s FAP84430_pass_1c0cb450_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_108 -s FAP84430_pass_1c0cb450_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_109 -s FAP84430_pass_1c0cb450_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_10 -s FAP84430_pass_1c0cb450_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_110 -s FAP84430_pass_1c0cb450_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_111 -s FAP84430_pass_1c0cb450_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_112 -s FAP84430_pass_1c0cb450_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_113 -s FAP84430_pass_1c0cb450_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_114 -s FAP84430_pass_1c0cb450_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_115 -s FAP84430_pass_1c0cb450_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_116 -s FAP84430_pass_1c0cb450_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_117 -s FAP84430_pass_1c0cb450_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_118 -s FAP84430_pass_1c0cb450_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_119 -s FAP84430_pass_1c0cb450_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_11 -s FAP84430_pass_1c0cb450_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_120 -s FAP84430_pass_1c0cb450_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_121 -s FAP84430_pass_1c0cb450_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_122 -s FAP84430_pass_1c0cb450_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_123 -s FAP84430_pass_1c0cb450_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_124 -s FAP84430_pass_1c0cb450_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_125 -s FAP84430_pass_1c0cb450_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_126 -s FAP84430_pass_1c0cb450_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_127 -s FAP84430_pass_1c0cb450_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_128 -s FAP84430_pass_1c0cb450_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_129 -s FAP84430_pass_1c0cb450_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_12 -s FAP84430_pass_1c0cb450_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_130 -s FAP84430_pass_1c0cb450_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_131 -s FAP84430_pass_1c0cb450_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_132 -s FAP84430_pass_1c0cb450_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_133 -s FAP84430_pass_1c0cb450_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_134 -s FAP84430_pass_1c0cb450_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_135 -s FAP84430_pass_1c0cb450_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_136 -s FAP84430_pass_1c0cb450_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_137 -s FAP84430_pass_1c0cb450_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_138 -s FAP84430_pass_1c0cb450_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_139 -s FAP84430_pass_1c0cb450_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_13 -s FAP84430_pass_1c0cb450_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_140 -s FAP84430_pass_1c0cb450_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_141 -s FAP84430_pass_1c0cb450_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_142 -s FAP84430_pass_1c0cb450_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_143 -s FAP84430_pass_1c0cb450_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_144 -s FAP84430_pass_1c0cb450_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_145 -s FAP84430_pass_1c0cb450_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_146 -s FAP84430_pass_1c0cb450_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_147 -s FAP84430_pass_1c0cb450_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_148 -s FAP84430_pass_1c0cb450_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_149 -s FAP84430_pass_1c0cb450_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_14 -s FAP84430_pass_1c0cb450_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_150 -s FAP84430_pass_1c0cb450_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_151 -s FAP84430_pass_1c0cb450_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_152 -s FAP84430_pass_1c0cb450_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_153 -s FAP84430_pass_1c0cb450_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_154 -s FAP84430_pass_1c0cb450_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_155 -s FAP84430_pass_1c0cb450_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_156 -s FAP84430_pass_1c0cb450_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_157 -s FAP84430_pass_1c0cb450_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_158 -s FAP84430_pass_1c0cb450_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_159 -s FAP84430_pass_1c0cb450_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_15 -s FAP84430_pass_1c0cb450_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_160 -s FAP84430_pass_1c0cb450_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_161 -s FAP84430_pass_1c0cb450_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_162 -s FAP84430_pass_1c0cb450_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_163 -s FAP84430_pass_1c0cb450_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_164 -s FAP84430_pass_1c0cb450_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_165 -s FAP84430_pass_1c0cb450_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_166 -s FAP84430_pass_1c0cb450_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_167 -s FAP84430_pass_1c0cb450_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_168 -s FAP84430_pass_1c0cb450_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_169 -s FAP84430_pass_1c0cb450_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_16 -s FAP84430_pass_1c0cb450_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_170 -s FAP84430_pass_1c0cb450_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_171 -s FAP84430_pass_1c0cb450_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_172 -s FAP84430_pass_1c0cb450_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_173 -s FAP84430_pass_1c0cb450_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_174 -s FAP84430_pass_1c0cb450_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_175 -s FAP84430_pass_1c0cb450_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_176 -s FAP84430_pass_1c0cb450_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_177 -s FAP84430_pass_1c0cb450_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_178 -s FAP84430_pass_1c0cb450_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_179 -s FAP84430_pass_1c0cb450_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_17 -s FAP84430_pass_1c0cb450_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_180 -s FAP84430_pass_1c0cb450_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_181 -s FAP84430_pass_1c0cb450_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_182 -s FAP84430_pass_1c0cb450_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_183 -s FAP84430_pass_1c0cb450_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_184 -s FAP84430_pass_1c0cb450_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_185 -s FAP84430_pass_1c0cb450_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_186 -s FAP84430_pass_1c0cb450_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_187 -s FAP84430_pass_1c0cb450_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_188 -s FAP84430_pass_1c0cb450_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_189 -s FAP84430_pass_1c0cb450_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_18 -s FAP84430_pass_1c0cb450_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_190 -s FAP84430_pass_1c0cb450_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_191 -s FAP84430_pass_1c0cb450_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_192 -s FAP84430_pass_1c0cb450_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_193 -s FAP84430_pass_1c0cb450_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_194 -s FAP84430_pass_1c0cb450_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_195 -s FAP84430_pass_1c0cb450_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_196 -s FAP84430_pass_1c0cb450_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_197 -s FAP84430_pass_1c0cb450_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_198 -s FAP84430_pass_1c0cb450_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_199 -s FAP84430_pass_1c0cb450_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_19 -s FAP84430_pass_1c0cb450_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_1 -s FAP84430_pass_1c0cb450_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_20 -s FAP84430_pass_1c0cb450_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_21 -s FAP84430_pass_1c0cb450_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_22 -s FAP84430_pass_1c0cb450_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_23 -s FAP84430_pass_1c0cb450_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_24 -s FAP84430_pass_1c0cb450_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_25 -s FAP84430_pass_1c0cb450_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_26 -s FAP84430_pass_1c0cb450_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_27 -s FAP84430_pass_1c0cb450_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_28 -s FAP84430_pass_1c0cb450_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_29 -s FAP84430_pass_1c0cb450_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_2 -s FAP84430_pass_1c0cb450_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_30 -s FAP84430_pass_1c0cb450_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_31 -s FAP84430_pass_1c0cb450_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_32 -s FAP84430_pass_1c0cb450_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_33 -s FAP84430_pass_1c0cb450_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_34 -s FAP84430_pass_1c0cb450_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_35 -s FAP84430_pass_1c0cb450_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_36 -s FAP84430_pass_1c0cb450_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_37 -s FAP84430_pass_1c0cb450_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_38 -s FAP84430_pass_1c0cb450_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_39 -s FAP84430_pass_1c0cb450_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_3 -s FAP84430_pass_1c0cb450_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_40 -s FAP84430_pass_1c0cb450_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_41 -s FAP84430_pass_1c0cb450_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_42 -s FAP84430_pass_1c0cb450_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_43 -s FAP84430_pass_1c0cb450_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_44 -s FAP84430_pass_1c0cb450_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_45 -s FAP84430_pass_1c0cb450_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_46 -s FAP84430_pass_1c0cb450_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_47 -s FAP84430_pass_1c0cb450_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_48 -s FAP84430_pass_1c0cb450_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_49 -s FAP84430_pass_1c0cb450_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_4 -s FAP84430_pass_1c0cb450_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_50 -s FAP84430_pass_1c0cb450_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_51 -s FAP84430_pass_1c0cb450_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_52 -s FAP84430_pass_1c0cb450_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_53 -s FAP84430_pass_1c0cb450_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_54 -s FAP84430_pass_1c0cb450_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_55 -s FAP84430_pass_1c0cb450_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_56 -s FAP84430_pass_1c0cb450_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_57 -s FAP84430_pass_1c0cb450_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_58 -s FAP84430_pass_1c0cb450_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_59 -s FAP84430_pass_1c0cb450_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_5 -s FAP84430_pass_1c0cb450_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_60 -s FAP84430_pass_1c0cb450_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_61 -s FAP84430_pass_1c0cb450_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_62 -s FAP84430_pass_1c0cb450_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_63 -s FAP84430_pass_1c0cb450_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_64 -s FAP84430_pass_1c0cb450_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_65 -s FAP84430_pass_1c0cb450_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_66 -s FAP84430_pass_1c0cb450_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_67 -s FAP84430_pass_1c0cb450_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_68 -s FAP84430_pass_1c0cb450_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_69 -s FAP84430_pass_1c0cb450_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_6 -s FAP84430_pass_1c0cb450_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_70 -s FAP84430_pass_1c0cb450_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_71 -s FAP84430_pass_1c0cb450_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_72 -s FAP84430_pass_1c0cb450_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_73 -s FAP84430_pass_1c0cb450_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_74 -s FAP84430_pass_1c0cb450_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_75 -s FAP84430_pass_1c0cb450_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_76 -s FAP84430_pass_1c0cb450_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_77 -s FAP84430_pass_1c0cb450_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_78 -s FAP84430_pass_1c0cb450_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_79 -s FAP84430_pass_1c0cb450_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_7 -s FAP84430_pass_1c0cb450_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_80 -s FAP84430_pass_1c0cb450_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_81 -s FAP84430_pass_1c0cb450_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_82 -s FAP84430_pass_1c0cb450_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_83 -s FAP84430_pass_1c0cb450_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_84 -s FAP84430_pass_1c0cb450_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_85 -s FAP84430_pass_1c0cb450_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_86 -s FAP84430_pass_1c0cb450_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_87 -s FAP84430_pass_1c0cb450_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_88 -s FAP84430_pass_1c0cb450_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_89 -s FAP84430_pass_1c0cb450_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_8 -s FAP84430_pass_1c0cb450_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_90 -s FAP84430_pass_1c0cb450_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_91 -s FAP84430_pass_1c0cb450_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_92 -s FAP84430_pass_1c0cb450_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_93 -s FAP84430_pass_1c0cb450_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_94 -s FAP84430_pass_1c0cb450_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_95 -s FAP84430_pass_1c0cb450_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_96 -s FAP84430_pass_1c0cb450_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_97 -s FAP84430_pass_1c0cb450_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_98 -s FAP84430_pass_1c0cb450_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_99 -s FAP84430_pass_1c0cb450_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAP84430_pass_1c0cb450_9 -s FAP84430_pass_1c0cb450_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_0 -s FAQ03537_pass_1996ab04_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_100 -s FAQ03537_pass_1996ab04_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_101 -s FAQ03537_pass_1996ab04_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_102 -s FAQ03537_pass_1996ab04_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_103 -s FAQ03537_pass_1996ab04_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_104 -s FAQ03537_pass_1996ab04_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_105 -s FAQ03537_pass_1996ab04_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_106 -s FAQ03537_pass_1996ab04_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_107 -s FAQ03537_pass_1996ab04_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_108 -s FAQ03537_pass_1996ab04_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_109 -s FAQ03537_pass_1996ab04_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_10 -s FAQ03537_pass_1996ab04_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_110 -s FAQ03537_pass_1996ab04_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_111 -s FAQ03537_pass_1996ab04_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_112 -s FAQ03537_pass_1996ab04_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_113 -s FAQ03537_pass_1996ab04_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_114 -s FAQ03537_pass_1996ab04_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_115 -s FAQ03537_pass_1996ab04_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_116 -s FAQ03537_pass_1996ab04_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_117 -s FAQ03537_pass_1996ab04_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_118 -s FAQ03537_pass_1996ab04_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_119 -s FAQ03537_pass_1996ab04_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_11 -s FAQ03537_pass_1996ab04_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_120 -s FAQ03537_pass_1996ab04_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_121 -s FAQ03537_pass_1996ab04_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_122 -s FAQ03537_pass_1996ab04_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_123 -s FAQ03537_pass_1996ab04_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_124 -s FAQ03537_pass_1996ab04_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_125 -s FAQ03537_pass_1996ab04_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_126 -s FAQ03537_pass_1996ab04_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_127 -s FAQ03537_pass_1996ab04_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_128 -s FAQ03537_pass_1996ab04_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_129 -s FAQ03537_pass_1996ab04_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_12 -s FAQ03537_pass_1996ab04_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_130 -s FAQ03537_pass_1996ab04_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_131 -s FAQ03537_pass_1996ab04_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_132 -s FAQ03537_pass_1996ab04_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_133 -s FAQ03537_pass_1996ab04_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_134 -s FAQ03537_pass_1996ab04_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_135 -s FAQ03537_pass_1996ab04_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_136 -s FAQ03537_pass_1996ab04_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_137 -s FAQ03537_pass_1996ab04_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_138 -s FAQ03537_pass_1996ab04_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_139 -s FAQ03537_pass_1996ab04_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_13 -s FAQ03537_pass_1996ab04_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_140 -s FAQ03537_pass_1996ab04_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_141 -s FAQ03537_pass_1996ab04_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_142 -s FAQ03537_pass_1996ab04_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_143 -s FAQ03537_pass_1996ab04_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_144 -s FAQ03537_pass_1996ab04_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_145 -s FAQ03537_pass_1996ab04_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_146 -s FAQ03537_pass_1996ab04_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_147 -s FAQ03537_pass_1996ab04_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_148 -s FAQ03537_pass_1996ab04_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_149 -s FAQ03537_pass_1996ab04_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_14 -s FAQ03537_pass_1996ab04_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_150 -s FAQ03537_pass_1996ab04_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_151 -s FAQ03537_pass_1996ab04_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_152 -s FAQ03537_pass_1996ab04_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_153 -s FAQ03537_pass_1996ab04_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_154 -s FAQ03537_pass_1996ab04_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_155 -s FAQ03537_pass_1996ab04_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_156 -s FAQ03537_pass_1996ab04_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_157 -s FAQ03537_pass_1996ab04_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_158 -s FAQ03537_pass_1996ab04_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_159 -s FAQ03537_pass_1996ab04_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_15 -s FAQ03537_pass_1996ab04_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_160 -s FAQ03537_pass_1996ab04_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_161 -s FAQ03537_pass_1996ab04_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_162 -s FAQ03537_pass_1996ab04_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_163 -s FAQ03537_pass_1996ab04_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_164 -s FAQ03537_pass_1996ab04_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_165 -s FAQ03537_pass_1996ab04_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_166 -s FAQ03537_pass_1996ab04_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_167 -s FAQ03537_pass_1996ab04_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_168 -s FAQ03537_pass_1996ab04_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_169 -s FAQ03537_pass_1996ab04_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_16 -s FAQ03537_pass_1996ab04_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_170 -s FAQ03537_pass_1996ab04_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_171 -s FAQ03537_pass_1996ab04_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_172 -s FAQ03537_pass_1996ab04_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_173 -s FAQ03537_pass_1996ab04_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_174 -s FAQ03537_pass_1996ab04_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_175 -s FAQ03537_pass_1996ab04_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_176 -s FAQ03537_pass_1996ab04_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_177 -s FAQ03537_pass_1996ab04_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_178 -s FAQ03537_pass_1996ab04_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_179 -s FAQ03537_pass_1996ab04_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_17 -s FAQ03537_pass_1996ab04_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_180 -s FAQ03537_pass_1996ab04_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_181 -s FAQ03537_pass_1996ab04_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_182 -s FAQ03537_pass_1996ab04_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_183 -s FAQ03537_pass_1996ab04_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_184 -s FAQ03537_pass_1996ab04_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_185 -s FAQ03537_pass_1996ab04_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_186 -s FAQ03537_pass_1996ab04_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_187 -s FAQ03537_pass_1996ab04_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_188 -s FAQ03537_pass_1996ab04_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_189 -s FAQ03537_pass_1996ab04_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_18 -s FAQ03537_pass_1996ab04_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_190 -s FAQ03537_pass_1996ab04_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_191 -s FAQ03537_pass_1996ab04_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_192 -s FAQ03537_pass_1996ab04_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_193 -s FAQ03537_pass_1996ab04_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_194 -s FAQ03537_pass_1996ab04_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_195 -s FAQ03537_pass_1996ab04_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_196 -s FAQ03537_pass_1996ab04_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_197 -s FAQ03537_pass_1996ab04_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_198 -s FAQ03537_pass_1996ab04_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_199 -s FAQ03537_pass_1996ab04_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_19 -s FAQ03537_pass_1996ab04_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_1 -s FAQ03537_pass_1996ab04_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_200 -s FAQ03537_pass_1996ab04_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_201 -s FAQ03537_pass_1996ab04_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_202 -s FAQ03537_pass_1996ab04_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_203 -s FAQ03537_pass_1996ab04_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_204 -s FAQ03537_pass_1996ab04_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_205 -s FAQ03537_pass_1996ab04_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_206 -s FAQ03537_pass_1996ab04_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_207 -s FAQ03537_pass_1996ab04_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_208 -s FAQ03537_pass_1996ab04_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_209 -s FAQ03537_pass_1996ab04_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_20 -s FAQ03537_pass_1996ab04_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_210 -s FAQ03537_pass_1996ab04_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_211 -s FAQ03537_pass_1996ab04_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_212 -s FAQ03537_pass_1996ab04_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_213 -s FAQ03537_pass_1996ab04_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_214 -s FAQ03537_pass_1996ab04_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_215 -s FAQ03537_pass_1996ab04_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_216 -s FAQ03537_pass_1996ab04_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_217 -s FAQ03537_pass_1996ab04_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_218 -s FAQ03537_pass_1996ab04_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_219 -s FAQ03537_pass_1996ab04_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_21 -s FAQ03537_pass_1996ab04_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_220 -s FAQ03537_pass_1996ab04_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_221 -s FAQ03537_pass_1996ab04_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_222 -s FAQ03537_pass_1996ab04_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_223 -s FAQ03537_pass_1996ab04_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_224 -s FAQ03537_pass_1996ab04_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_225 -s FAQ03537_pass_1996ab04_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_226 -s FAQ03537_pass_1996ab04_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_227 -s FAQ03537_pass_1996ab04_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_228 -s FAQ03537_pass_1996ab04_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_229 -s FAQ03537_pass_1996ab04_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_22 -s FAQ03537_pass_1996ab04_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_230 -s FAQ03537_pass_1996ab04_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_231 -s FAQ03537_pass_1996ab04_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_232 -s FAQ03537_pass_1996ab04_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_233 -s FAQ03537_pass_1996ab04_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_234 -s FAQ03537_pass_1996ab04_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_235 -s FAQ03537_pass_1996ab04_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_236 -s FAQ03537_pass_1996ab04_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_237 -s FAQ03537_pass_1996ab04_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_238 -s FAQ03537_pass_1996ab04_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_239 -s FAQ03537_pass_1996ab04_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_23 -s FAQ03537_pass_1996ab04_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_240 -s FAQ03537_pass_1996ab04_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_241 -s FAQ03537_pass_1996ab04_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_242 -s FAQ03537_pass_1996ab04_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_243 -s FAQ03537_pass_1996ab04_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_244 -s FAQ03537_pass_1996ab04_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_245 -s FAQ03537_pass_1996ab04_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_246 -s FAQ03537_pass_1996ab04_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_247 -s FAQ03537_pass_1996ab04_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_248 -s FAQ03537_pass_1996ab04_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_249 -s FAQ03537_pass_1996ab04_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_24 -s FAQ03537_pass_1996ab04_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_250 -s FAQ03537_pass_1996ab04_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_251 -s FAQ03537_pass_1996ab04_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_252 -s FAQ03537_pass_1996ab04_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_253 -s FAQ03537_pass_1996ab04_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_254 -s FAQ03537_pass_1996ab04_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_255 -s FAQ03537_pass_1996ab04_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_256 -s FAQ03537_pass_1996ab04_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_257 -s FAQ03537_pass_1996ab04_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_258 -s FAQ03537_pass_1996ab04_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_259 -s FAQ03537_pass_1996ab04_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_25 -s FAQ03537_pass_1996ab04_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_260 -s FAQ03537_pass_1996ab04_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_261 -s FAQ03537_pass_1996ab04_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_262 -s FAQ03537_pass_1996ab04_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_263 -s FAQ03537_pass_1996ab04_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_264 -s FAQ03537_pass_1996ab04_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_265 -s FAQ03537_pass_1996ab04_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_266 -s FAQ03537_pass_1996ab04_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_26 -s FAQ03537_pass_1996ab04_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_27 -s FAQ03537_pass_1996ab04_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_28 -s FAQ03537_pass_1996ab04_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_29 -s FAQ03537_pass_1996ab04_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_2 -s FAQ03537_pass_1996ab04_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_30 -s FAQ03537_pass_1996ab04_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_31 -s FAQ03537_pass_1996ab04_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_32 -s FAQ03537_pass_1996ab04_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_33 -s FAQ03537_pass_1996ab04_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_34 -s FAQ03537_pass_1996ab04_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_35 -s FAQ03537_pass_1996ab04_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_36 -s FAQ03537_pass_1996ab04_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_37 -s FAQ03537_pass_1996ab04_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_38 -s FAQ03537_pass_1996ab04_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_39 -s FAQ03537_pass_1996ab04_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_3 -s FAQ03537_pass_1996ab04_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_40 -s FAQ03537_pass_1996ab04_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_41 -s FAQ03537_pass_1996ab04_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_42 -s FAQ03537_pass_1996ab04_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_43 -s FAQ03537_pass_1996ab04_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_44 -s FAQ03537_pass_1996ab04_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_45 -s FAQ03537_pass_1996ab04_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_46 -s FAQ03537_pass_1996ab04_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_47 -s FAQ03537_pass_1996ab04_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_48 -s FAQ03537_pass_1996ab04_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_49 -s FAQ03537_pass_1996ab04_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_4 -s FAQ03537_pass_1996ab04_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_50 -s FAQ03537_pass_1996ab04_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_51 -s FAQ03537_pass_1996ab04_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_52 -s FAQ03537_pass_1996ab04_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_53 -s FAQ03537_pass_1996ab04_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_54 -s FAQ03537_pass_1996ab04_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_55 -s FAQ03537_pass_1996ab04_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_56 -s FAQ03537_pass_1996ab04_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_57 -s FAQ03537_pass_1996ab04_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_58 -s FAQ03537_pass_1996ab04_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_59 -s FAQ03537_pass_1996ab04_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_5 -s FAQ03537_pass_1996ab04_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_60 -s FAQ03537_pass_1996ab04_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_61 -s FAQ03537_pass_1996ab04_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_62 -s FAQ03537_pass_1996ab04_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_63 -s FAQ03537_pass_1996ab04_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_64 -s FAQ03537_pass_1996ab04_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_65 -s FAQ03537_pass_1996ab04_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_66 -s FAQ03537_pass_1996ab04_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_67 -s FAQ03537_pass_1996ab04_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_68 -s FAQ03537_pass_1996ab04_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_69 -s FAQ03537_pass_1996ab04_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_6 -s FAQ03537_pass_1996ab04_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_70 -s FAQ03537_pass_1996ab04_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_71 -s FAQ03537_pass_1996ab04_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_72 -s FAQ03537_pass_1996ab04_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_73 -s FAQ03537_pass_1996ab04_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_74 -s FAQ03537_pass_1996ab04_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_75 -s FAQ03537_pass_1996ab04_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_76 -s FAQ03537_pass_1996ab04_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_77 -s FAQ03537_pass_1996ab04_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_78 -s FAQ03537_pass_1996ab04_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_79 -s FAQ03537_pass_1996ab04_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_7 -s FAQ03537_pass_1996ab04_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_80 -s FAQ03537_pass_1996ab04_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_81 -s FAQ03537_pass_1996ab04_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_82 -s FAQ03537_pass_1996ab04_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_83 -s FAQ03537_pass_1996ab04_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_84 -s FAQ03537_pass_1996ab04_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_85 -s FAQ03537_pass_1996ab04_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_86 -s FAQ03537_pass_1996ab04_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_87 -s FAQ03537_pass_1996ab04_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_88 -s FAQ03537_pass_1996ab04_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_89 -s FAQ03537_pass_1996ab04_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_8 -s FAQ03537_pass_1996ab04_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_90 -s FAQ03537_pass_1996ab04_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_91 -s FAQ03537_pass_1996ab04_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_92 -s FAQ03537_pass_1996ab04_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_93 -s FAQ03537_pass_1996ab04_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_94 -s FAQ03537_pass_1996ab04_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_95 -s FAQ03537_pass_1996ab04_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_96 -s FAQ03537_pass_1996ab04_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_97 -s FAQ03537_pass_1996ab04_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_98 -s FAQ03537_pass_1996ab04_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_99 -s FAQ03537_pass_1996ab04_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ03537_pass_1996ab04_9 -s FAQ03537_pass_1996ab04_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_0 -s FAQ05340_pass_337c6e89_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_100 -s FAQ05340_pass_337c6e89_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_101 -s FAQ05340_pass_337c6e89_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_102 -s FAQ05340_pass_337c6e89_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_103 -s FAQ05340_pass_337c6e89_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_104 -s FAQ05340_pass_337c6e89_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_105 -s FAQ05340_pass_337c6e89_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_106 -s FAQ05340_pass_337c6e89_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_107 -s FAQ05340_pass_337c6e89_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_108 -s FAQ05340_pass_337c6e89_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_109 -s FAQ05340_pass_337c6e89_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_10 -s FAQ05340_pass_337c6e89_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_110 -s FAQ05340_pass_337c6e89_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_111 -s FAQ05340_pass_337c6e89_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_112 -s FAQ05340_pass_337c6e89_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_113 -s FAQ05340_pass_337c6e89_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_114 -s FAQ05340_pass_337c6e89_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_115 -s FAQ05340_pass_337c6e89_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_116 -s FAQ05340_pass_337c6e89_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_117 -s FAQ05340_pass_337c6e89_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_118 -s FAQ05340_pass_337c6e89_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_119 -s FAQ05340_pass_337c6e89_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_11 -s FAQ05340_pass_337c6e89_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_120 -s FAQ05340_pass_337c6e89_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_121 -s FAQ05340_pass_337c6e89_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_122 -s FAQ05340_pass_337c6e89_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_123 -s FAQ05340_pass_337c6e89_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_124 -s FAQ05340_pass_337c6e89_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_125 -s FAQ05340_pass_337c6e89_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_126 -s FAQ05340_pass_337c6e89_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_127 -s FAQ05340_pass_337c6e89_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_128 -s FAQ05340_pass_337c6e89_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_129 -s FAQ05340_pass_337c6e89_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_12 -s FAQ05340_pass_337c6e89_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_130 -s FAQ05340_pass_337c6e89_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_131 -s FAQ05340_pass_337c6e89_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_132 -s FAQ05340_pass_337c6e89_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_133 -s FAQ05340_pass_337c6e89_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_134 -s FAQ05340_pass_337c6e89_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_135 -s FAQ05340_pass_337c6e89_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_136 -s FAQ05340_pass_337c6e89_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_137 -s FAQ05340_pass_337c6e89_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_138 -s FAQ05340_pass_337c6e89_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_139 -s FAQ05340_pass_337c6e89_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_13 -s FAQ05340_pass_337c6e89_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_140 -s FAQ05340_pass_337c6e89_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_141 -s FAQ05340_pass_337c6e89_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_142 -s FAQ05340_pass_337c6e89_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_143 -s FAQ05340_pass_337c6e89_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_144 -s FAQ05340_pass_337c6e89_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_145 -s FAQ05340_pass_337c6e89_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_146 -s FAQ05340_pass_337c6e89_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_147 -s FAQ05340_pass_337c6e89_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_148 -s FAQ05340_pass_337c6e89_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_149 -s FAQ05340_pass_337c6e89_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_14 -s FAQ05340_pass_337c6e89_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_150 -s FAQ05340_pass_337c6e89_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_151 -s FAQ05340_pass_337c6e89_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_152 -s FAQ05340_pass_337c6e89_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_153 -s FAQ05340_pass_337c6e89_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_154 -s FAQ05340_pass_337c6e89_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_155 -s FAQ05340_pass_337c6e89_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_156 -s FAQ05340_pass_337c6e89_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_157 -s FAQ05340_pass_337c6e89_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_158 -s FAQ05340_pass_337c6e89_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_159 -s FAQ05340_pass_337c6e89_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_15 -s FAQ05340_pass_337c6e89_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_160 -s FAQ05340_pass_337c6e89_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_161 -s FAQ05340_pass_337c6e89_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_162 -s FAQ05340_pass_337c6e89_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_163 -s FAQ05340_pass_337c6e89_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_164 -s FAQ05340_pass_337c6e89_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_165 -s FAQ05340_pass_337c6e89_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_166 -s FAQ05340_pass_337c6e89_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_167 -s FAQ05340_pass_337c6e89_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_168 -s FAQ05340_pass_337c6e89_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_169 -s FAQ05340_pass_337c6e89_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_16 -s FAQ05340_pass_337c6e89_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_170 -s FAQ05340_pass_337c6e89_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_171 -s FAQ05340_pass_337c6e89_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_172 -s FAQ05340_pass_337c6e89_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_173 -s FAQ05340_pass_337c6e89_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_174 -s FAQ05340_pass_337c6e89_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_175 -s FAQ05340_pass_337c6e89_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_176 -s FAQ05340_pass_337c6e89_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_177 -s FAQ05340_pass_337c6e89_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_178 -s FAQ05340_pass_337c6e89_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_179 -s FAQ05340_pass_337c6e89_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_17 -s FAQ05340_pass_337c6e89_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_180 -s FAQ05340_pass_337c6e89_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_181 -s FAQ05340_pass_337c6e89_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_182 -s FAQ05340_pass_337c6e89_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_183 -s FAQ05340_pass_337c6e89_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_184 -s FAQ05340_pass_337c6e89_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_185 -s FAQ05340_pass_337c6e89_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_186 -s FAQ05340_pass_337c6e89_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_187 -s FAQ05340_pass_337c6e89_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_188 -s FAQ05340_pass_337c6e89_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_189 -s FAQ05340_pass_337c6e89_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_18 -s FAQ05340_pass_337c6e89_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_190 -s FAQ05340_pass_337c6e89_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_191 -s FAQ05340_pass_337c6e89_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_192 -s FAQ05340_pass_337c6e89_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_193 -s FAQ05340_pass_337c6e89_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_194 -s FAQ05340_pass_337c6e89_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_195 -s FAQ05340_pass_337c6e89_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_196 -s FAQ05340_pass_337c6e89_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_197 -s FAQ05340_pass_337c6e89_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_198 -s FAQ05340_pass_337c6e89_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_199 -s FAQ05340_pass_337c6e89_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_19 -s FAQ05340_pass_337c6e89_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_1 -s FAQ05340_pass_337c6e89_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_200 -s FAQ05340_pass_337c6e89_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_201 -s FAQ05340_pass_337c6e89_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_202 -s FAQ05340_pass_337c6e89_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_203 -s FAQ05340_pass_337c6e89_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_204 -s FAQ05340_pass_337c6e89_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_205 -s FAQ05340_pass_337c6e89_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_206 -s FAQ05340_pass_337c6e89_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_207 -s FAQ05340_pass_337c6e89_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_208 -s FAQ05340_pass_337c6e89_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_209 -s FAQ05340_pass_337c6e89_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_20 -s FAQ05340_pass_337c6e89_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_210 -s FAQ05340_pass_337c6e89_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_211 -s FAQ05340_pass_337c6e89_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_212 -s FAQ05340_pass_337c6e89_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_213 -s FAQ05340_pass_337c6e89_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_214 -s FAQ05340_pass_337c6e89_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_215 -s FAQ05340_pass_337c6e89_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_216 -s FAQ05340_pass_337c6e89_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_217 -s FAQ05340_pass_337c6e89_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_218 -s FAQ05340_pass_337c6e89_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_219 -s FAQ05340_pass_337c6e89_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_21 -s FAQ05340_pass_337c6e89_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_220 -s FAQ05340_pass_337c6e89_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_221 -s FAQ05340_pass_337c6e89_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_222 -s FAQ05340_pass_337c6e89_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_223 -s FAQ05340_pass_337c6e89_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_224 -s FAQ05340_pass_337c6e89_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_225 -s FAQ05340_pass_337c6e89_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_226 -s FAQ05340_pass_337c6e89_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_227 -s FAQ05340_pass_337c6e89_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_228 -s FAQ05340_pass_337c6e89_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_229 -s FAQ05340_pass_337c6e89_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_22 -s FAQ05340_pass_337c6e89_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_230 -s FAQ05340_pass_337c6e89_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_231 -s FAQ05340_pass_337c6e89_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_232 -s FAQ05340_pass_337c6e89_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_233 -s FAQ05340_pass_337c6e89_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_234 -s FAQ05340_pass_337c6e89_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_235 -s FAQ05340_pass_337c6e89_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_236 -s FAQ05340_pass_337c6e89_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_237 -s FAQ05340_pass_337c6e89_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_238 -s FAQ05340_pass_337c6e89_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_239 -s FAQ05340_pass_337c6e89_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_23 -s FAQ05340_pass_337c6e89_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_240 -s FAQ05340_pass_337c6e89_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_241 -s FAQ05340_pass_337c6e89_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_242 -s FAQ05340_pass_337c6e89_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_243 -s FAQ05340_pass_337c6e89_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_244 -s FAQ05340_pass_337c6e89_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_245 -s FAQ05340_pass_337c6e89_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_246 -s FAQ05340_pass_337c6e89_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_247 -s FAQ05340_pass_337c6e89_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_248 -s FAQ05340_pass_337c6e89_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_249 -s FAQ05340_pass_337c6e89_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_24 -s FAQ05340_pass_337c6e89_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_250 -s FAQ05340_pass_337c6e89_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_251 -s FAQ05340_pass_337c6e89_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_252 -s FAQ05340_pass_337c6e89_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_253 -s FAQ05340_pass_337c6e89_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_254 -s FAQ05340_pass_337c6e89_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_255 -s FAQ05340_pass_337c6e89_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_256 -s FAQ05340_pass_337c6e89_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_257 -s FAQ05340_pass_337c6e89_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_258 -s FAQ05340_pass_337c6e89_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_259 -s FAQ05340_pass_337c6e89_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_25 -s FAQ05340_pass_337c6e89_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_260 -s FAQ05340_pass_337c6e89_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_261 -s FAQ05340_pass_337c6e89_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_262 -s FAQ05340_pass_337c6e89_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_263 -s FAQ05340_pass_337c6e89_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_264 -s FAQ05340_pass_337c6e89_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_265 -s FAQ05340_pass_337c6e89_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_266 -s FAQ05340_pass_337c6e89_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_267 -s FAQ05340_pass_337c6e89_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_268 -s FAQ05340_pass_337c6e89_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_26 -s FAQ05340_pass_337c6e89_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_27 -s FAQ05340_pass_337c6e89_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_28 -s FAQ05340_pass_337c6e89_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_29 -s FAQ05340_pass_337c6e89_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_2 -s FAQ05340_pass_337c6e89_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_30 -s FAQ05340_pass_337c6e89_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_31 -s FAQ05340_pass_337c6e89_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_32 -s FAQ05340_pass_337c6e89_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_33 -s FAQ05340_pass_337c6e89_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_34 -s FAQ05340_pass_337c6e89_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_35 -s FAQ05340_pass_337c6e89_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_36 -s FAQ05340_pass_337c6e89_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_37 -s FAQ05340_pass_337c6e89_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_38 -s FAQ05340_pass_337c6e89_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_39 -s FAQ05340_pass_337c6e89_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_3 -s FAQ05340_pass_337c6e89_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_40 -s FAQ05340_pass_337c6e89_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_41 -s FAQ05340_pass_337c6e89_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_42 -s FAQ05340_pass_337c6e89_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_43 -s FAQ05340_pass_337c6e89_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_44 -s FAQ05340_pass_337c6e89_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_45 -s FAQ05340_pass_337c6e89_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_46 -s FAQ05340_pass_337c6e89_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_47 -s FAQ05340_pass_337c6e89_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_48 -s FAQ05340_pass_337c6e89_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_49 -s FAQ05340_pass_337c6e89_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_4 -s FAQ05340_pass_337c6e89_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_50 -s FAQ05340_pass_337c6e89_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_51 -s FAQ05340_pass_337c6e89_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_52 -s FAQ05340_pass_337c6e89_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_53 -s FAQ05340_pass_337c6e89_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_54 -s FAQ05340_pass_337c6e89_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_55 -s FAQ05340_pass_337c6e89_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_56 -s FAQ05340_pass_337c6e89_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_57 -s FAQ05340_pass_337c6e89_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_58 -s FAQ05340_pass_337c6e89_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_59 -s FAQ05340_pass_337c6e89_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_5 -s FAQ05340_pass_337c6e89_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_60 -s FAQ05340_pass_337c6e89_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_61 -s FAQ05340_pass_337c6e89_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_62 -s FAQ05340_pass_337c6e89_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_63 -s FAQ05340_pass_337c6e89_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_64 -s FAQ05340_pass_337c6e89_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_65 -s FAQ05340_pass_337c6e89_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_66 -s FAQ05340_pass_337c6e89_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_67 -s FAQ05340_pass_337c6e89_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_68 -s FAQ05340_pass_337c6e89_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_69 -s FAQ05340_pass_337c6e89_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_6 -s FAQ05340_pass_337c6e89_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_70 -s FAQ05340_pass_337c6e89_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_71 -s FAQ05340_pass_337c6e89_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_72 -s FAQ05340_pass_337c6e89_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_73 -s FAQ05340_pass_337c6e89_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_74 -s FAQ05340_pass_337c6e89_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_75 -s FAQ05340_pass_337c6e89_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_76 -s FAQ05340_pass_337c6e89_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_77 -s FAQ05340_pass_337c6e89_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_78 -s FAQ05340_pass_337c6e89_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_79 -s FAQ05340_pass_337c6e89_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_7 -s FAQ05340_pass_337c6e89_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_80 -s FAQ05340_pass_337c6e89_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_81 -s FAQ05340_pass_337c6e89_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_82 -s FAQ05340_pass_337c6e89_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_83 -s FAQ05340_pass_337c6e89_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_84 -s FAQ05340_pass_337c6e89_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_85 -s FAQ05340_pass_337c6e89_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_86 -s FAQ05340_pass_337c6e89_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_87 -s FAQ05340_pass_337c6e89_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_88 -s FAQ05340_pass_337c6e89_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_89 -s FAQ05340_pass_337c6e89_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_8 -s FAQ05340_pass_337c6e89_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_90 -s FAQ05340_pass_337c6e89_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_91 -s FAQ05340_pass_337c6e89_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_92 -s FAQ05340_pass_337c6e89_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_93 -s FAQ05340_pass_337c6e89_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_94 -s FAQ05340_pass_337c6e89_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_95 -s FAQ05340_pass_337c6e89_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_96 -s FAQ05340_pass_337c6e89_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_97 -s FAQ05340_pass_337c6e89_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_98 -s FAQ05340_pass_337c6e89_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_99 -s FAQ05340_pass_337c6e89_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05340_pass_337c6e89_9 -s FAQ05340_pass_337c6e89_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_0 -s FAQ05341_pass_3e6cbf65_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_100 -s FAQ05341_pass_3e6cbf65_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_101 -s FAQ05341_pass_3e6cbf65_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_102 -s FAQ05341_pass_3e6cbf65_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_103 -s FAQ05341_pass_3e6cbf65_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_104 -s FAQ05341_pass_3e6cbf65_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_105 -s FAQ05341_pass_3e6cbf65_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_106 -s FAQ05341_pass_3e6cbf65_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_107 -s FAQ05341_pass_3e6cbf65_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_108 -s FAQ05341_pass_3e6cbf65_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_109 -s FAQ05341_pass_3e6cbf65_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_10 -s FAQ05341_pass_3e6cbf65_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_110 -s FAQ05341_pass_3e6cbf65_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_111 -s FAQ05341_pass_3e6cbf65_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_112 -s FAQ05341_pass_3e6cbf65_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_113 -s FAQ05341_pass_3e6cbf65_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_114 -s FAQ05341_pass_3e6cbf65_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_115 -s FAQ05341_pass_3e6cbf65_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_116 -s FAQ05341_pass_3e6cbf65_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_117 -s FAQ05341_pass_3e6cbf65_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_118 -s FAQ05341_pass_3e6cbf65_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_119 -s FAQ05341_pass_3e6cbf65_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_11 -s FAQ05341_pass_3e6cbf65_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_120 -s FAQ05341_pass_3e6cbf65_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_121 -s FAQ05341_pass_3e6cbf65_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_122 -s FAQ05341_pass_3e6cbf65_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_123 -s FAQ05341_pass_3e6cbf65_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_124 -s FAQ05341_pass_3e6cbf65_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_125 -s FAQ05341_pass_3e6cbf65_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_126 -s FAQ05341_pass_3e6cbf65_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_127 -s FAQ05341_pass_3e6cbf65_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_128 -s FAQ05341_pass_3e6cbf65_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_129 -s FAQ05341_pass_3e6cbf65_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_12 -s FAQ05341_pass_3e6cbf65_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_130 -s FAQ05341_pass_3e6cbf65_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_131 -s FAQ05341_pass_3e6cbf65_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_132 -s FAQ05341_pass_3e6cbf65_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_133 -s FAQ05341_pass_3e6cbf65_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_134 -s FAQ05341_pass_3e6cbf65_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_135 -s FAQ05341_pass_3e6cbf65_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_136 -s FAQ05341_pass_3e6cbf65_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_137 -s FAQ05341_pass_3e6cbf65_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_138 -s FAQ05341_pass_3e6cbf65_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_139 -s FAQ05341_pass_3e6cbf65_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_13 -s FAQ05341_pass_3e6cbf65_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_140 -s FAQ05341_pass_3e6cbf65_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_141 -s FAQ05341_pass_3e6cbf65_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_142 -s FAQ05341_pass_3e6cbf65_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_143 -s FAQ05341_pass_3e6cbf65_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_144 -s FAQ05341_pass_3e6cbf65_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_145 -s FAQ05341_pass_3e6cbf65_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_146 -s FAQ05341_pass_3e6cbf65_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_147 -s FAQ05341_pass_3e6cbf65_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_148 -s FAQ05341_pass_3e6cbf65_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_149 -s FAQ05341_pass_3e6cbf65_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_14 -s FAQ05341_pass_3e6cbf65_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_150 -s FAQ05341_pass_3e6cbf65_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_151 -s FAQ05341_pass_3e6cbf65_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_152 -s FAQ05341_pass_3e6cbf65_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_153 -s FAQ05341_pass_3e6cbf65_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_154 -s FAQ05341_pass_3e6cbf65_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_155 -s FAQ05341_pass_3e6cbf65_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_156 -s FAQ05341_pass_3e6cbf65_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_157 -s FAQ05341_pass_3e6cbf65_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_158 -s FAQ05341_pass_3e6cbf65_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_159 -s FAQ05341_pass_3e6cbf65_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_15 -s FAQ05341_pass_3e6cbf65_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_160 -s FAQ05341_pass_3e6cbf65_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_161 -s FAQ05341_pass_3e6cbf65_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_162 -s FAQ05341_pass_3e6cbf65_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_163 -s FAQ05341_pass_3e6cbf65_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_164 -s FAQ05341_pass_3e6cbf65_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_165 -s FAQ05341_pass_3e6cbf65_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_166 -s FAQ05341_pass_3e6cbf65_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_167 -s FAQ05341_pass_3e6cbf65_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_168 -s FAQ05341_pass_3e6cbf65_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_169 -s FAQ05341_pass_3e6cbf65_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_16 -s FAQ05341_pass_3e6cbf65_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_170 -s FAQ05341_pass_3e6cbf65_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_171 -s FAQ05341_pass_3e6cbf65_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_172 -s FAQ05341_pass_3e6cbf65_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_173 -s FAQ05341_pass_3e6cbf65_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_174 -s FAQ05341_pass_3e6cbf65_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_175 -s FAQ05341_pass_3e6cbf65_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_176 -s FAQ05341_pass_3e6cbf65_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_177 -s FAQ05341_pass_3e6cbf65_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_178 -s FAQ05341_pass_3e6cbf65_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_179 -s FAQ05341_pass_3e6cbf65_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_17 -s FAQ05341_pass_3e6cbf65_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_180 -s FAQ05341_pass_3e6cbf65_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_181 -s FAQ05341_pass_3e6cbf65_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_182 -s FAQ05341_pass_3e6cbf65_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_183 -s FAQ05341_pass_3e6cbf65_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_184 -s FAQ05341_pass_3e6cbf65_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_185 -s FAQ05341_pass_3e6cbf65_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_186 -s FAQ05341_pass_3e6cbf65_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_187 -s FAQ05341_pass_3e6cbf65_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_188 -s FAQ05341_pass_3e6cbf65_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_189 -s FAQ05341_pass_3e6cbf65_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_18 -s FAQ05341_pass_3e6cbf65_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_190 -s FAQ05341_pass_3e6cbf65_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_191 -s FAQ05341_pass_3e6cbf65_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_192 -s FAQ05341_pass_3e6cbf65_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_193 -s FAQ05341_pass_3e6cbf65_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_194 -s FAQ05341_pass_3e6cbf65_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_195 -s FAQ05341_pass_3e6cbf65_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_196 -s FAQ05341_pass_3e6cbf65_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_197 -s FAQ05341_pass_3e6cbf65_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_198 -s FAQ05341_pass_3e6cbf65_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_199 -s FAQ05341_pass_3e6cbf65_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_19 -s FAQ05341_pass_3e6cbf65_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_1 -s FAQ05341_pass_3e6cbf65_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_200 -s FAQ05341_pass_3e6cbf65_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_201 -s FAQ05341_pass_3e6cbf65_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_202 -s FAQ05341_pass_3e6cbf65_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_203 -s FAQ05341_pass_3e6cbf65_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_204 -s FAQ05341_pass_3e6cbf65_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_205 -s FAQ05341_pass_3e6cbf65_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_206 -s FAQ05341_pass_3e6cbf65_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_207 -s FAQ05341_pass_3e6cbf65_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_208 -s FAQ05341_pass_3e6cbf65_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_209 -s FAQ05341_pass_3e6cbf65_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_20 -s FAQ05341_pass_3e6cbf65_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_210 -s FAQ05341_pass_3e6cbf65_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_211 -s FAQ05341_pass_3e6cbf65_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_212 -s FAQ05341_pass_3e6cbf65_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_213 -s FAQ05341_pass_3e6cbf65_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_214 -s FAQ05341_pass_3e6cbf65_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_215 -s FAQ05341_pass_3e6cbf65_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_216 -s FAQ05341_pass_3e6cbf65_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_217 -s FAQ05341_pass_3e6cbf65_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_218 -s FAQ05341_pass_3e6cbf65_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_219 -s FAQ05341_pass_3e6cbf65_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_21 -s FAQ05341_pass_3e6cbf65_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_220 -s FAQ05341_pass_3e6cbf65_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_221 -s FAQ05341_pass_3e6cbf65_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_222 -s FAQ05341_pass_3e6cbf65_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_223 -s FAQ05341_pass_3e6cbf65_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_224 -s FAQ05341_pass_3e6cbf65_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_225 -s FAQ05341_pass_3e6cbf65_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_226 -s FAQ05341_pass_3e6cbf65_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_22 -s FAQ05341_pass_3e6cbf65_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_23 -s FAQ05341_pass_3e6cbf65_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_24 -s FAQ05341_pass_3e6cbf65_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_25 -s FAQ05341_pass_3e6cbf65_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_26 -s FAQ05341_pass_3e6cbf65_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_27 -s FAQ05341_pass_3e6cbf65_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_28 -s FAQ05341_pass_3e6cbf65_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_29 -s FAQ05341_pass_3e6cbf65_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_2 -s FAQ05341_pass_3e6cbf65_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_30 -s FAQ05341_pass_3e6cbf65_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_31 -s FAQ05341_pass_3e6cbf65_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_32 -s FAQ05341_pass_3e6cbf65_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_33 -s FAQ05341_pass_3e6cbf65_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_34 -s FAQ05341_pass_3e6cbf65_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_35 -s FAQ05341_pass_3e6cbf65_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_36 -s FAQ05341_pass_3e6cbf65_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_37 -s FAQ05341_pass_3e6cbf65_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_38 -s FAQ05341_pass_3e6cbf65_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_39 -s FAQ05341_pass_3e6cbf65_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_3 -s FAQ05341_pass_3e6cbf65_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_40 -s FAQ05341_pass_3e6cbf65_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_41 -s FAQ05341_pass_3e6cbf65_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_42 -s FAQ05341_pass_3e6cbf65_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_43 -s FAQ05341_pass_3e6cbf65_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_44 -s FAQ05341_pass_3e6cbf65_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_45 -s FAQ05341_pass_3e6cbf65_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_46 -s FAQ05341_pass_3e6cbf65_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_47 -s FAQ05341_pass_3e6cbf65_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_48 -s FAQ05341_pass_3e6cbf65_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_49 -s FAQ05341_pass_3e6cbf65_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_4 -s FAQ05341_pass_3e6cbf65_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_50 -s FAQ05341_pass_3e6cbf65_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_51 -s FAQ05341_pass_3e6cbf65_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_52 -s FAQ05341_pass_3e6cbf65_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_53 -s FAQ05341_pass_3e6cbf65_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_54 -s FAQ05341_pass_3e6cbf65_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_55 -s FAQ05341_pass_3e6cbf65_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_56 -s FAQ05341_pass_3e6cbf65_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_57 -s FAQ05341_pass_3e6cbf65_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_58 -s FAQ05341_pass_3e6cbf65_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_59 -s FAQ05341_pass_3e6cbf65_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_5 -s FAQ05341_pass_3e6cbf65_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_60 -s FAQ05341_pass_3e6cbf65_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_61 -s FAQ05341_pass_3e6cbf65_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_62 -s FAQ05341_pass_3e6cbf65_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_63 -s FAQ05341_pass_3e6cbf65_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_64 -s FAQ05341_pass_3e6cbf65_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_65 -s FAQ05341_pass_3e6cbf65_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_66 -s FAQ05341_pass_3e6cbf65_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_67 -s FAQ05341_pass_3e6cbf65_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_68 -s FAQ05341_pass_3e6cbf65_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_69 -s FAQ05341_pass_3e6cbf65_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_6 -s FAQ05341_pass_3e6cbf65_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_70 -s FAQ05341_pass_3e6cbf65_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_71 -s FAQ05341_pass_3e6cbf65_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_72 -s FAQ05341_pass_3e6cbf65_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_73 -s FAQ05341_pass_3e6cbf65_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_74 -s FAQ05341_pass_3e6cbf65_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_75 -s FAQ05341_pass_3e6cbf65_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_76 -s FAQ05341_pass_3e6cbf65_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_77 -s FAQ05341_pass_3e6cbf65_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_78 -s FAQ05341_pass_3e6cbf65_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_79 -s FAQ05341_pass_3e6cbf65_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_7 -s FAQ05341_pass_3e6cbf65_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_80 -s FAQ05341_pass_3e6cbf65_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_81 -s FAQ05341_pass_3e6cbf65_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_82 -s FAQ05341_pass_3e6cbf65_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_83 -s FAQ05341_pass_3e6cbf65_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_84 -s FAQ05341_pass_3e6cbf65_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_85 -s FAQ05341_pass_3e6cbf65_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_86 -s FAQ05341_pass_3e6cbf65_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_87 -s FAQ05341_pass_3e6cbf65_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_88 -s FAQ05341_pass_3e6cbf65_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_89 -s FAQ05341_pass_3e6cbf65_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_8 -s FAQ05341_pass_3e6cbf65_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_90 -s FAQ05341_pass_3e6cbf65_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_91 -s FAQ05341_pass_3e6cbf65_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_92 -s FAQ05341_pass_3e6cbf65_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_93 -s FAQ05341_pass_3e6cbf65_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_94 -s FAQ05341_pass_3e6cbf65_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_95 -s FAQ05341_pass_3e6cbf65_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_96 -s FAQ05341_pass_3e6cbf65_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_97 -s FAQ05341_pass_3e6cbf65_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_98 -s FAQ05341_pass_3e6cbf65_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_99 -s FAQ05341_pass_3e6cbf65_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ05341_pass_3e6cbf65_9 -s FAQ05341_pass_3e6cbf65_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_0 -s FAQ06152_pass_577ecfd0_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_100 -s FAQ06152_pass_577ecfd0_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_101 -s FAQ06152_pass_577ecfd0_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_102 -s FAQ06152_pass_577ecfd0_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_103 -s FAQ06152_pass_577ecfd0_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_104 -s FAQ06152_pass_577ecfd0_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_105 -s FAQ06152_pass_577ecfd0_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_106 -s FAQ06152_pass_577ecfd0_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_107 -s FAQ06152_pass_577ecfd0_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_108 -s FAQ06152_pass_577ecfd0_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_109 -s FAQ06152_pass_577ecfd0_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_10 -s FAQ06152_pass_577ecfd0_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_110 -s FAQ06152_pass_577ecfd0_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_111 -s FAQ06152_pass_577ecfd0_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_112 -s FAQ06152_pass_577ecfd0_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_113 -s FAQ06152_pass_577ecfd0_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_114 -s FAQ06152_pass_577ecfd0_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_115 -s FAQ06152_pass_577ecfd0_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_116 -s FAQ06152_pass_577ecfd0_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_117 -s FAQ06152_pass_577ecfd0_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_118 -s FAQ06152_pass_577ecfd0_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_119 -s FAQ06152_pass_577ecfd0_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_11 -s FAQ06152_pass_577ecfd0_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_120 -s FAQ06152_pass_577ecfd0_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_121 -s FAQ06152_pass_577ecfd0_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_122 -s FAQ06152_pass_577ecfd0_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_123 -s FAQ06152_pass_577ecfd0_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_124 -s FAQ06152_pass_577ecfd0_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_125 -s FAQ06152_pass_577ecfd0_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_126 -s FAQ06152_pass_577ecfd0_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_127 -s FAQ06152_pass_577ecfd0_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_128 -s FAQ06152_pass_577ecfd0_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_129 -s FAQ06152_pass_577ecfd0_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_12 -s FAQ06152_pass_577ecfd0_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_130 -s FAQ06152_pass_577ecfd0_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_131 -s FAQ06152_pass_577ecfd0_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_132 -s FAQ06152_pass_577ecfd0_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_133 -s FAQ06152_pass_577ecfd0_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_134 -s FAQ06152_pass_577ecfd0_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_135 -s FAQ06152_pass_577ecfd0_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_136 -s FAQ06152_pass_577ecfd0_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_137 -s FAQ06152_pass_577ecfd0_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_138 -s FAQ06152_pass_577ecfd0_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_139 -s FAQ06152_pass_577ecfd0_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_13 -s FAQ06152_pass_577ecfd0_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_140 -s FAQ06152_pass_577ecfd0_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_141 -s FAQ06152_pass_577ecfd0_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_142 -s FAQ06152_pass_577ecfd0_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_143 -s FAQ06152_pass_577ecfd0_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_144 -s FAQ06152_pass_577ecfd0_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_145 -s FAQ06152_pass_577ecfd0_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_146 -s FAQ06152_pass_577ecfd0_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_147 -s FAQ06152_pass_577ecfd0_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_148 -s FAQ06152_pass_577ecfd0_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_149 -s FAQ06152_pass_577ecfd0_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_14 -s FAQ06152_pass_577ecfd0_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_150 -s FAQ06152_pass_577ecfd0_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_151 -s FAQ06152_pass_577ecfd0_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_152 -s FAQ06152_pass_577ecfd0_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_153 -s FAQ06152_pass_577ecfd0_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_154 -s FAQ06152_pass_577ecfd0_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_155 -s FAQ06152_pass_577ecfd0_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_156 -s FAQ06152_pass_577ecfd0_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_157 -s FAQ06152_pass_577ecfd0_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_158 -s FAQ06152_pass_577ecfd0_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_159 -s FAQ06152_pass_577ecfd0_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_15 -s FAQ06152_pass_577ecfd0_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_160 -s FAQ06152_pass_577ecfd0_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_161 -s FAQ06152_pass_577ecfd0_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_162 -s FAQ06152_pass_577ecfd0_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_163 -s FAQ06152_pass_577ecfd0_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_164 -s FAQ06152_pass_577ecfd0_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_165 -s FAQ06152_pass_577ecfd0_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_166 -s FAQ06152_pass_577ecfd0_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_167 -s FAQ06152_pass_577ecfd0_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_168 -s FAQ06152_pass_577ecfd0_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_169 -s FAQ06152_pass_577ecfd0_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_16 -s FAQ06152_pass_577ecfd0_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_170 -s FAQ06152_pass_577ecfd0_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_171 -s FAQ06152_pass_577ecfd0_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_172 -s FAQ06152_pass_577ecfd0_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_173 -s FAQ06152_pass_577ecfd0_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_174 -s FAQ06152_pass_577ecfd0_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_175 -s FAQ06152_pass_577ecfd0_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_176 -s FAQ06152_pass_577ecfd0_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_177 -s FAQ06152_pass_577ecfd0_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_178 -s FAQ06152_pass_577ecfd0_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_179 -s FAQ06152_pass_577ecfd0_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_17 -s FAQ06152_pass_577ecfd0_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_180 -s FAQ06152_pass_577ecfd0_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_181 -s FAQ06152_pass_577ecfd0_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_182 -s FAQ06152_pass_577ecfd0_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_183 -s FAQ06152_pass_577ecfd0_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_184 -s FAQ06152_pass_577ecfd0_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_185 -s FAQ06152_pass_577ecfd0_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_186 -s FAQ06152_pass_577ecfd0_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_187 -s FAQ06152_pass_577ecfd0_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_188 -s FAQ06152_pass_577ecfd0_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_189 -s FAQ06152_pass_577ecfd0_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_18 -s FAQ06152_pass_577ecfd0_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_190 -s FAQ06152_pass_577ecfd0_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_191 -s FAQ06152_pass_577ecfd0_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_192 -s FAQ06152_pass_577ecfd0_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_193 -s FAQ06152_pass_577ecfd0_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_194 -s FAQ06152_pass_577ecfd0_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_195 -s FAQ06152_pass_577ecfd0_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_196 -s FAQ06152_pass_577ecfd0_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_197 -s FAQ06152_pass_577ecfd0_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_198 -s FAQ06152_pass_577ecfd0_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_199 -s FAQ06152_pass_577ecfd0_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_19 -s FAQ06152_pass_577ecfd0_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_1 -s FAQ06152_pass_577ecfd0_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_200 -s FAQ06152_pass_577ecfd0_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_201 -s FAQ06152_pass_577ecfd0_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_202 -s FAQ06152_pass_577ecfd0_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_203 -s FAQ06152_pass_577ecfd0_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_204 -s FAQ06152_pass_577ecfd0_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_205 -s FAQ06152_pass_577ecfd0_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_206 -s FAQ06152_pass_577ecfd0_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_207 -s FAQ06152_pass_577ecfd0_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_208 -s FAQ06152_pass_577ecfd0_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_209 -s FAQ06152_pass_577ecfd0_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_20 -s FAQ06152_pass_577ecfd0_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_210 -s FAQ06152_pass_577ecfd0_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_211 -s FAQ06152_pass_577ecfd0_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_212 -s FAQ06152_pass_577ecfd0_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_213 -s FAQ06152_pass_577ecfd0_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_214 -s FAQ06152_pass_577ecfd0_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_215 -s FAQ06152_pass_577ecfd0_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_216 -s FAQ06152_pass_577ecfd0_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_217 -s FAQ06152_pass_577ecfd0_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_218 -s FAQ06152_pass_577ecfd0_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_219 -s FAQ06152_pass_577ecfd0_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_21 -s FAQ06152_pass_577ecfd0_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_220 -s FAQ06152_pass_577ecfd0_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_221 -s FAQ06152_pass_577ecfd0_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_222 -s FAQ06152_pass_577ecfd0_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_223 -s FAQ06152_pass_577ecfd0_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_224 -s FAQ06152_pass_577ecfd0_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_225 -s FAQ06152_pass_577ecfd0_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_226 -s FAQ06152_pass_577ecfd0_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_227 -s FAQ06152_pass_577ecfd0_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_228 -s FAQ06152_pass_577ecfd0_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_229 -s FAQ06152_pass_577ecfd0_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_22 -s FAQ06152_pass_577ecfd0_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_230 -s FAQ06152_pass_577ecfd0_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_231 -s FAQ06152_pass_577ecfd0_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_232 -s FAQ06152_pass_577ecfd0_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_233 -s FAQ06152_pass_577ecfd0_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_234 -s FAQ06152_pass_577ecfd0_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_235 -s FAQ06152_pass_577ecfd0_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_236 -s FAQ06152_pass_577ecfd0_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_237 -s FAQ06152_pass_577ecfd0_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_238 -s FAQ06152_pass_577ecfd0_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_239 -s FAQ06152_pass_577ecfd0_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_23 -s FAQ06152_pass_577ecfd0_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_240 -s FAQ06152_pass_577ecfd0_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_241 -s FAQ06152_pass_577ecfd0_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_242 -s FAQ06152_pass_577ecfd0_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_243 -s FAQ06152_pass_577ecfd0_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_244 -s FAQ06152_pass_577ecfd0_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_245 -s FAQ06152_pass_577ecfd0_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_246 -s FAQ06152_pass_577ecfd0_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_247 -s FAQ06152_pass_577ecfd0_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_248 -s FAQ06152_pass_577ecfd0_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_249 -s FAQ06152_pass_577ecfd0_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_24 -s FAQ06152_pass_577ecfd0_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_250 -s FAQ06152_pass_577ecfd0_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_251 -s FAQ06152_pass_577ecfd0_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_252 -s FAQ06152_pass_577ecfd0_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_253 -s FAQ06152_pass_577ecfd0_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_254 -s FAQ06152_pass_577ecfd0_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_255 -s FAQ06152_pass_577ecfd0_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_256 -s FAQ06152_pass_577ecfd0_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_257 -s FAQ06152_pass_577ecfd0_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_258 -s FAQ06152_pass_577ecfd0_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_259 -s FAQ06152_pass_577ecfd0_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_25 -s FAQ06152_pass_577ecfd0_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_260 -s FAQ06152_pass_577ecfd0_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_261 -s FAQ06152_pass_577ecfd0_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_262 -s FAQ06152_pass_577ecfd0_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_263 -s FAQ06152_pass_577ecfd0_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_264 -s FAQ06152_pass_577ecfd0_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_265 -s FAQ06152_pass_577ecfd0_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_266 -s FAQ06152_pass_577ecfd0_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_267 -s FAQ06152_pass_577ecfd0_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_268 -s FAQ06152_pass_577ecfd0_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_269 -s FAQ06152_pass_577ecfd0_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_26 -s FAQ06152_pass_577ecfd0_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_270 -s FAQ06152_pass_577ecfd0_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_271 -s FAQ06152_pass_577ecfd0_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_272 -s FAQ06152_pass_577ecfd0_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_273 -s FAQ06152_pass_577ecfd0_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_274 -s FAQ06152_pass_577ecfd0_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_275 -s FAQ06152_pass_577ecfd0_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_276 -s FAQ06152_pass_577ecfd0_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_277 -s FAQ06152_pass_577ecfd0_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_278 -s FAQ06152_pass_577ecfd0_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_279 -s FAQ06152_pass_577ecfd0_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_27 -s FAQ06152_pass_577ecfd0_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_280 -s FAQ06152_pass_577ecfd0_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_281 -s FAQ06152_pass_577ecfd0_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_282 -s FAQ06152_pass_577ecfd0_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_283 -s FAQ06152_pass_577ecfd0_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_284 -s FAQ06152_pass_577ecfd0_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_285 -s FAQ06152_pass_577ecfd0_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_286 -s FAQ06152_pass_577ecfd0_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_287 -s FAQ06152_pass_577ecfd0_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_288 -s FAQ06152_pass_577ecfd0_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_289 -s FAQ06152_pass_577ecfd0_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_28 -s FAQ06152_pass_577ecfd0_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_290 -s FAQ06152_pass_577ecfd0_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_291 -s FAQ06152_pass_577ecfd0_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_292 -s FAQ06152_pass_577ecfd0_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_293 -s FAQ06152_pass_577ecfd0_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_294 -s FAQ06152_pass_577ecfd0_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_295 -s FAQ06152_pass_577ecfd0_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_296 -s FAQ06152_pass_577ecfd0_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_297 -s FAQ06152_pass_577ecfd0_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_298 -s FAQ06152_pass_577ecfd0_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_299 -s FAQ06152_pass_577ecfd0_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_29 -s FAQ06152_pass_577ecfd0_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_2 -s FAQ06152_pass_577ecfd0_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_300 -s FAQ06152_pass_577ecfd0_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_301 -s FAQ06152_pass_577ecfd0_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_302 -s FAQ06152_pass_577ecfd0_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_303 -s FAQ06152_pass_577ecfd0_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_304 -s FAQ06152_pass_577ecfd0_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_305 -s FAQ06152_pass_577ecfd0_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_306 -s FAQ06152_pass_577ecfd0_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_307 -s FAQ06152_pass_577ecfd0_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_308 -s FAQ06152_pass_577ecfd0_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_309 -s FAQ06152_pass_577ecfd0_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_30 -s FAQ06152_pass_577ecfd0_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_310 -s FAQ06152_pass_577ecfd0_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_311 -s FAQ06152_pass_577ecfd0_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_312 -s FAQ06152_pass_577ecfd0_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_313 -s FAQ06152_pass_577ecfd0_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_314 -s FAQ06152_pass_577ecfd0_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_315 -s FAQ06152_pass_577ecfd0_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_316 -s FAQ06152_pass_577ecfd0_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_317 -s FAQ06152_pass_577ecfd0_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_318 -s FAQ06152_pass_577ecfd0_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_319 -s FAQ06152_pass_577ecfd0_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_31 -s FAQ06152_pass_577ecfd0_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_320 -s FAQ06152_pass_577ecfd0_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_321 -s FAQ06152_pass_577ecfd0_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_322 -s FAQ06152_pass_577ecfd0_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_323 -s FAQ06152_pass_577ecfd0_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_324 -s FAQ06152_pass_577ecfd0_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_325 -s FAQ06152_pass_577ecfd0_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_326 -s FAQ06152_pass_577ecfd0_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_327 -s FAQ06152_pass_577ecfd0_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_328 -s FAQ06152_pass_577ecfd0_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_329 -s FAQ06152_pass_577ecfd0_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_32 -s FAQ06152_pass_577ecfd0_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_330 -s FAQ06152_pass_577ecfd0_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_331 -s FAQ06152_pass_577ecfd0_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_332 -s FAQ06152_pass_577ecfd0_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_333 -s FAQ06152_pass_577ecfd0_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_334 -s FAQ06152_pass_577ecfd0_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_335 -s FAQ06152_pass_577ecfd0_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_336 -s FAQ06152_pass_577ecfd0_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_337 -s FAQ06152_pass_577ecfd0_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_338 -s FAQ06152_pass_577ecfd0_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_339 -s FAQ06152_pass_577ecfd0_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_33 -s FAQ06152_pass_577ecfd0_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_34 -s FAQ06152_pass_577ecfd0_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_35 -s FAQ06152_pass_577ecfd0_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_36 -s FAQ06152_pass_577ecfd0_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_37 -s FAQ06152_pass_577ecfd0_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_38 -s FAQ06152_pass_577ecfd0_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_39 -s FAQ06152_pass_577ecfd0_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_3 -s FAQ06152_pass_577ecfd0_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_40 -s FAQ06152_pass_577ecfd0_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_41 -s FAQ06152_pass_577ecfd0_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_42 -s FAQ06152_pass_577ecfd0_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_43 -s FAQ06152_pass_577ecfd0_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_44 -s FAQ06152_pass_577ecfd0_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_45 -s FAQ06152_pass_577ecfd0_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_46 -s FAQ06152_pass_577ecfd0_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_47 -s FAQ06152_pass_577ecfd0_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_48 -s FAQ06152_pass_577ecfd0_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_49 -s FAQ06152_pass_577ecfd0_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_4 -s FAQ06152_pass_577ecfd0_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_50 -s FAQ06152_pass_577ecfd0_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_51 -s FAQ06152_pass_577ecfd0_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_52 -s FAQ06152_pass_577ecfd0_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_53 -s FAQ06152_pass_577ecfd0_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_54 -s FAQ06152_pass_577ecfd0_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_55 -s FAQ06152_pass_577ecfd0_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_56 -s FAQ06152_pass_577ecfd0_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_57 -s FAQ06152_pass_577ecfd0_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_58 -s FAQ06152_pass_577ecfd0_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_59 -s FAQ06152_pass_577ecfd0_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_5 -s FAQ06152_pass_577ecfd0_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_60 -s FAQ06152_pass_577ecfd0_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_61 -s FAQ06152_pass_577ecfd0_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_62 -s FAQ06152_pass_577ecfd0_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_63 -s FAQ06152_pass_577ecfd0_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_64 -s FAQ06152_pass_577ecfd0_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_65 -s FAQ06152_pass_577ecfd0_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_66 -s FAQ06152_pass_577ecfd0_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_67 -s FAQ06152_pass_577ecfd0_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_68 -s FAQ06152_pass_577ecfd0_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_69 -s FAQ06152_pass_577ecfd0_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_6 -s FAQ06152_pass_577ecfd0_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_70 -s FAQ06152_pass_577ecfd0_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_71 -s FAQ06152_pass_577ecfd0_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_72 -s FAQ06152_pass_577ecfd0_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_73 -s FAQ06152_pass_577ecfd0_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_74 -s FAQ06152_pass_577ecfd0_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_75 -s FAQ06152_pass_577ecfd0_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_76 -s FAQ06152_pass_577ecfd0_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_77 -s FAQ06152_pass_577ecfd0_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_78 -s FAQ06152_pass_577ecfd0_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_79 -s FAQ06152_pass_577ecfd0_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_7 -s FAQ06152_pass_577ecfd0_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_80 -s FAQ06152_pass_577ecfd0_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_81 -s FAQ06152_pass_577ecfd0_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_82 -s FAQ06152_pass_577ecfd0_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_83 -s FAQ06152_pass_577ecfd0_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_84 -s FAQ06152_pass_577ecfd0_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_85 -s FAQ06152_pass_577ecfd0_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_86 -s FAQ06152_pass_577ecfd0_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_87 -s FAQ06152_pass_577ecfd0_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_88 -s FAQ06152_pass_577ecfd0_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_89 -s FAQ06152_pass_577ecfd0_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_8 -s FAQ06152_pass_577ecfd0_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_90 -s FAQ06152_pass_577ecfd0_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_91 -s FAQ06152_pass_577ecfd0_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_92 -s FAQ06152_pass_577ecfd0_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_93 -s FAQ06152_pass_577ecfd0_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_94 -s FAQ06152_pass_577ecfd0_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_95 -s FAQ06152_pass_577ecfd0_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_96 -s FAQ06152_pass_577ecfd0_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_97 -s FAQ06152_pass_577ecfd0_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_98 -s FAQ06152_pass_577ecfd0_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_99 -s FAQ06152_pass_577ecfd0_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAQ06152_pass_577ecfd0_9 -s FAQ06152_pass_577ecfd0_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_0 -s FAR09630_pass_b7ef3c6a_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_100 -s FAR09630_pass_b7ef3c6a_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_101 -s FAR09630_pass_b7ef3c6a_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_102 -s FAR09630_pass_b7ef3c6a_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_103 -s FAR09630_pass_b7ef3c6a_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_104 -s FAR09630_pass_b7ef3c6a_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_105 -s FAR09630_pass_b7ef3c6a_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_106 -s FAR09630_pass_b7ef3c6a_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_107 -s FAR09630_pass_b7ef3c6a_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_108 -s FAR09630_pass_b7ef3c6a_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_109 -s FAR09630_pass_b7ef3c6a_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_10 -s FAR09630_pass_b7ef3c6a_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_110 -s FAR09630_pass_b7ef3c6a_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_111 -s FAR09630_pass_b7ef3c6a_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_112 -s FAR09630_pass_b7ef3c6a_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_113 -s FAR09630_pass_b7ef3c6a_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_114 -s FAR09630_pass_b7ef3c6a_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_115 -s FAR09630_pass_b7ef3c6a_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_116 -s FAR09630_pass_b7ef3c6a_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_117 -s FAR09630_pass_b7ef3c6a_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_118 -s FAR09630_pass_b7ef3c6a_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_119 -s FAR09630_pass_b7ef3c6a_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_11 -s FAR09630_pass_b7ef3c6a_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_120 -s FAR09630_pass_b7ef3c6a_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_121 -s FAR09630_pass_b7ef3c6a_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_122 -s FAR09630_pass_b7ef3c6a_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_123 -s FAR09630_pass_b7ef3c6a_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_124 -s FAR09630_pass_b7ef3c6a_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_125 -s FAR09630_pass_b7ef3c6a_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_126 -s FAR09630_pass_b7ef3c6a_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_127 -s FAR09630_pass_b7ef3c6a_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_128 -s FAR09630_pass_b7ef3c6a_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_129 -s FAR09630_pass_b7ef3c6a_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_12 -s FAR09630_pass_b7ef3c6a_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_130 -s FAR09630_pass_b7ef3c6a_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_131 -s FAR09630_pass_b7ef3c6a_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_132 -s FAR09630_pass_b7ef3c6a_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_133 -s FAR09630_pass_b7ef3c6a_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_134 -s FAR09630_pass_b7ef3c6a_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_135 -s FAR09630_pass_b7ef3c6a_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_136 -s FAR09630_pass_b7ef3c6a_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_137 -s FAR09630_pass_b7ef3c6a_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_138 -s FAR09630_pass_b7ef3c6a_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_139 -s FAR09630_pass_b7ef3c6a_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_13 -s FAR09630_pass_b7ef3c6a_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_140 -s FAR09630_pass_b7ef3c6a_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_141 -s FAR09630_pass_b7ef3c6a_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_142 -s FAR09630_pass_b7ef3c6a_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_143 -s FAR09630_pass_b7ef3c6a_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_144 -s FAR09630_pass_b7ef3c6a_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_145 -s FAR09630_pass_b7ef3c6a_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_146 -s FAR09630_pass_b7ef3c6a_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_147 -s FAR09630_pass_b7ef3c6a_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_148 -s FAR09630_pass_b7ef3c6a_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_149 -s FAR09630_pass_b7ef3c6a_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_14 -s FAR09630_pass_b7ef3c6a_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_150 -s FAR09630_pass_b7ef3c6a_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_151 -s FAR09630_pass_b7ef3c6a_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_152 -s FAR09630_pass_b7ef3c6a_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_153 -s FAR09630_pass_b7ef3c6a_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_154 -s FAR09630_pass_b7ef3c6a_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_155 -s FAR09630_pass_b7ef3c6a_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_156 -s FAR09630_pass_b7ef3c6a_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_157 -s FAR09630_pass_b7ef3c6a_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_158 -s FAR09630_pass_b7ef3c6a_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_159 -s FAR09630_pass_b7ef3c6a_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_15 -s FAR09630_pass_b7ef3c6a_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_160 -s FAR09630_pass_b7ef3c6a_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_161 -s FAR09630_pass_b7ef3c6a_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_162 -s FAR09630_pass_b7ef3c6a_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_163 -s FAR09630_pass_b7ef3c6a_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_164 -s FAR09630_pass_b7ef3c6a_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_165 -s FAR09630_pass_b7ef3c6a_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_166 -s FAR09630_pass_b7ef3c6a_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_167 -s FAR09630_pass_b7ef3c6a_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_168 -s FAR09630_pass_b7ef3c6a_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_169 -s FAR09630_pass_b7ef3c6a_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_16 -s FAR09630_pass_b7ef3c6a_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_17 -s FAR09630_pass_b7ef3c6a_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_18 -s FAR09630_pass_b7ef3c6a_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_19 -s FAR09630_pass_b7ef3c6a_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_1 -s FAR09630_pass_b7ef3c6a_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_20 -s FAR09630_pass_b7ef3c6a_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_21 -s FAR09630_pass_b7ef3c6a_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_22 -s FAR09630_pass_b7ef3c6a_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_23 -s FAR09630_pass_b7ef3c6a_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_24 -s FAR09630_pass_b7ef3c6a_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_25 -s FAR09630_pass_b7ef3c6a_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_26 -s FAR09630_pass_b7ef3c6a_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_27 -s FAR09630_pass_b7ef3c6a_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_28 -s FAR09630_pass_b7ef3c6a_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_29 -s FAR09630_pass_b7ef3c6a_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_2 -s FAR09630_pass_b7ef3c6a_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_30 -s FAR09630_pass_b7ef3c6a_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_31 -s FAR09630_pass_b7ef3c6a_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_32 -s FAR09630_pass_b7ef3c6a_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_33 -s FAR09630_pass_b7ef3c6a_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_34 -s FAR09630_pass_b7ef3c6a_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_35 -s FAR09630_pass_b7ef3c6a_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_36 -s FAR09630_pass_b7ef3c6a_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_37 -s FAR09630_pass_b7ef3c6a_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_38 -s FAR09630_pass_b7ef3c6a_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_39 -s FAR09630_pass_b7ef3c6a_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_3 -s FAR09630_pass_b7ef3c6a_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_40 -s FAR09630_pass_b7ef3c6a_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_41 -s FAR09630_pass_b7ef3c6a_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_42 -s FAR09630_pass_b7ef3c6a_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_43 -s FAR09630_pass_b7ef3c6a_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_44 -s FAR09630_pass_b7ef3c6a_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_45 -s FAR09630_pass_b7ef3c6a_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_46 -s FAR09630_pass_b7ef3c6a_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_47 -s FAR09630_pass_b7ef3c6a_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_48 -s FAR09630_pass_b7ef3c6a_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_49 -s FAR09630_pass_b7ef3c6a_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_4 -s FAR09630_pass_b7ef3c6a_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_50 -s FAR09630_pass_b7ef3c6a_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_51 -s FAR09630_pass_b7ef3c6a_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_52 -s FAR09630_pass_b7ef3c6a_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_53 -s FAR09630_pass_b7ef3c6a_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_54 -s FAR09630_pass_b7ef3c6a_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_55 -s FAR09630_pass_b7ef3c6a_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_56 -s FAR09630_pass_b7ef3c6a_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_57 -s FAR09630_pass_b7ef3c6a_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_58 -s FAR09630_pass_b7ef3c6a_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_59 -s FAR09630_pass_b7ef3c6a_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_5 -s FAR09630_pass_b7ef3c6a_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_60 -s FAR09630_pass_b7ef3c6a_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_61 -s FAR09630_pass_b7ef3c6a_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_62 -s FAR09630_pass_b7ef3c6a_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_63 -s FAR09630_pass_b7ef3c6a_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_64 -s FAR09630_pass_b7ef3c6a_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_65 -s FAR09630_pass_b7ef3c6a_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_66 -s FAR09630_pass_b7ef3c6a_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_67 -s FAR09630_pass_b7ef3c6a_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_68 -s FAR09630_pass_b7ef3c6a_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_69 -s FAR09630_pass_b7ef3c6a_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_6 -s FAR09630_pass_b7ef3c6a_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_70 -s FAR09630_pass_b7ef3c6a_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_71 -s FAR09630_pass_b7ef3c6a_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_72 -s FAR09630_pass_b7ef3c6a_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_73 -s FAR09630_pass_b7ef3c6a_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_74 -s FAR09630_pass_b7ef3c6a_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_75 -s FAR09630_pass_b7ef3c6a_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_76 -s FAR09630_pass_b7ef3c6a_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_77 -s FAR09630_pass_b7ef3c6a_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_78 -s FAR09630_pass_b7ef3c6a_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_79 -s FAR09630_pass_b7ef3c6a_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_7 -s FAR09630_pass_b7ef3c6a_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_80 -s FAR09630_pass_b7ef3c6a_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_81 -s FAR09630_pass_b7ef3c6a_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_82 -s FAR09630_pass_b7ef3c6a_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_83 -s FAR09630_pass_b7ef3c6a_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_84 -s FAR09630_pass_b7ef3c6a_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_85 -s FAR09630_pass_b7ef3c6a_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_86 -s FAR09630_pass_b7ef3c6a_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_87 -s FAR09630_pass_b7ef3c6a_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_88 -s FAR09630_pass_b7ef3c6a_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_89 -s FAR09630_pass_b7ef3c6a_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_8 -s FAR09630_pass_b7ef3c6a_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_90 -s FAR09630_pass_b7ef3c6a_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_91 -s FAR09630_pass_b7ef3c6a_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_92 -s FAR09630_pass_b7ef3c6a_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_93 -s FAR09630_pass_b7ef3c6a_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_94 -s FAR09630_pass_b7ef3c6a_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_95 -s FAR09630_pass_b7ef3c6a_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_96 -s FAR09630_pass_b7ef3c6a_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_97 -s FAR09630_pass_b7ef3c6a_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_98 -s FAR09630_pass_b7ef3c6a_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_99 -s FAR09630_pass_b7ef3c6a_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR09630_pass_b7ef3c6a_9 -s FAR09630_pass_b7ef3c6a_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_0 -s FAR67234_pass_4b89a2d9_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_100 -s FAR67234_pass_4b89a2d9_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_101 -s FAR67234_pass_4b89a2d9_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_102 -s FAR67234_pass_4b89a2d9_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_103 -s FAR67234_pass_4b89a2d9_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_104 -s FAR67234_pass_4b89a2d9_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_105 -s FAR67234_pass_4b89a2d9_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_106 -s FAR67234_pass_4b89a2d9_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_107 -s FAR67234_pass_4b89a2d9_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_108 -s FAR67234_pass_4b89a2d9_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_109 -s FAR67234_pass_4b89a2d9_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_10 -s FAR67234_pass_4b89a2d9_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_110 -s FAR67234_pass_4b89a2d9_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_111 -s FAR67234_pass_4b89a2d9_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_112 -s FAR67234_pass_4b89a2d9_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_113 -s FAR67234_pass_4b89a2d9_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_114 -s FAR67234_pass_4b89a2d9_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_115 -s FAR67234_pass_4b89a2d9_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_116 -s FAR67234_pass_4b89a2d9_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_117 -s FAR67234_pass_4b89a2d9_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_118 -s FAR67234_pass_4b89a2d9_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_119 -s FAR67234_pass_4b89a2d9_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_11 -s FAR67234_pass_4b89a2d9_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_120 -s FAR67234_pass_4b89a2d9_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_121 -s FAR67234_pass_4b89a2d9_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_122 -s FAR67234_pass_4b89a2d9_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_123 -s FAR67234_pass_4b89a2d9_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_124 -s FAR67234_pass_4b89a2d9_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_125 -s FAR67234_pass_4b89a2d9_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_126 -s FAR67234_pass_4b89a2d9_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_127 -s FAR67234_pass_4b89a2d9_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_128 -s FAR67234_pass_4b89a2d9_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_129 -s FAR67234_pass_4b89a2d9_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_12 -s FAR67234_pass_4b89a2d9_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_13 -s FAR67234_pass_4b89a2d9_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_14 -s FAR67234_pass_4b89a2d9_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_15 -s FAR67234_pass_4b89a2d9_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_16 -s FAR67234_pass_4b89a2d9_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_17 -s FAR67234_pass_4b89a2d9_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_18 -s FAR67234_pass_4b89a2d9_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_19 -s FAR67234_pass_4b89a2d9_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_1 -s FAR67234_pass_4b89a2d9_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_20 -s FAR67234_pass_4b89a2d9_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_21 -s FAR67234_pass_4b89a2d9_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_22 -s FAR67234_pass_4b89a2d9_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_23 -s FAR67234_pass_4b89a2d9_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_24 -s FAR67234_pass_4b89a2d9_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_25 -s FAR67234_pass_4b89a2d9_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_26 -s FAR67234_pass_4b89a2d9_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_27 -s FAR67234_pass_4b89a2d9_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_28 -s FAR67234_pass_4b89a2d9_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_29 -s FAR67234_pass_4b89a2d9_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_2 -s FAR67234_pass_4b89a2d9_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_30 -s FAR67234_pass_4b89a2d9_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_31 -s FAR67234_pass_4b89a2d9_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_32 -s FAR67234_pass_4b89a2d9_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_33 -s FAR67234_pass_4b89a2d9_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_34 -s FAR67234_pass_4b89a2d9_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_35 -s FAR67234_pass_4b89a2d9_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_36 -s FAR67234_pass_4b89a2d9_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_37 -s FAR67234_pass_4b89a2d9_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_38 -s FAR67234_pass_4b89a2d9_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_39 -s FAR67234_pass_4b89a2d9_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_3 -s FAR67234_pass_4b89a2d9_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_40 -s FAR67234_pass_4b89a2d9_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_41 -s FAR67234_pass_4b89a2d9_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_42 -s FAR67234_pass_4b89a2d9_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_43 -s FAR67234_pass_4b89a2d9_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_44 -s FAR67234_pass_4b89a2d9_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_45 -s FAR67234_pass_4b89a2d9_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_46 -s FAR67234_pass_4b89a2d9_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_47 -s FAR67234_pass_4b89a2d9_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_48 -s FAR67234_pass_4b89a2d9_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_49 -s FAR67234_pass_4b89a2d9_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_4 -s FAR67234_pass_4b89a2d9_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_50 -s FAR67234_pass_4b89a2d9_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_51 -s FAR67234_pass_4b89a2d9_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_52 -s FAR67234_pass_4b89a2d9_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_53 -s FAR67234_pass_4b89a2d9_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_54 -s FAR67234_pass_4b89a2d9_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_55 -s FAR67234_pass_4b89a2d9_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_56 -s FAR67234_pass_4b89a2d9_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_57 -s FAR67234_pass_4b89a2d9_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_58 -s FAR67234_pass_4b89a2d9_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_59 -s FAR67234_pass_4b89a2d9_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_5 -s FAR67234_pass_4b89a2d9_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_60 -s FAR67234_pass_4b89a2d9_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_61 -s FAR67234_pass_4b89a2d9_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_62 -s FAR67234_pass_4b89a2d9_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_63 -s FAR67234_pass_4b89a2d9_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_64 -s FAR67234_pass_4b89a2d9_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_65 -s FAR67234_pass_4b89a2d9_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_66 -s FAR67234_pass_4b89a2d9_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_67 -s FAR67234_pass_4b89a2d9_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_68 -s FAR67234_pass_4b89a2d9_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_69 -s FAR67234_pass_4b89a2d9_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_6 -s FAR67234_pass_4b89a2d9_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_70 -s FAR67234_pass_4b89a2d9_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_71 -s FAR67234_pass_4b89a2d9_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_72 -s FAR67234_pass_4b89a2d9_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_73 -s FAR67234_pass_4b89a2d9_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_74 -s FAR67234_pass_4b89a2d9_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_75 -s FAR67234_pass_4b89a2d9_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_76 -s FAR67234_pass_4b89a2d9_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_77 -s FAR67234_pass_4b89a2d9_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_78 -s FAR67234_pass_4b89a2d9_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_79 -s FAR67234_pass_4b89a2d9_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_7 -s FAR67234_pass_4b89a2d9_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_80 -s FAR67234_pass_4b89a2d9_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_81 -s FAR67234_pass_4b89a2d9_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_82 -s FAR67234_pass_4b89a2d9_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_83 -s FAR67234_pass_4b89a2d9_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_84 -s FAR67234_pass_4b89a2d9_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_85 -s FAR67234_pass_4b89a2d9_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_86 -s FAR67234_pass_4b89a2d9_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_87 -s FAR67234_pass_4b89a2d9_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_88 -s FAR67234_pass_4b89a2d9_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_89 -s FAR67234_pass_4b89a2d9_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_8 -s FAR67234_pass_4b89a2d9_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_90 -s FAR67234_pass_4b89a2d9_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_91 -s FAR67234_pass_4b89a2d9_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_92 -s FAR67234_pass_4b89a2d9_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_93 -s FAR67234_pass_4b89a2d9_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_94 -s FAR67234_pass_4b89a2d9_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_95 -s FAR67234_pass_4b89a2d9_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_96 -s FAR67234_pass_4b89a2d9_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_97 -s FAR67234_pass_4b89a2d9_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_98 -s FAR67234_pass_4b89a2d9_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_99 -s FAR67234_pass_4b89a2d9_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR67234_pass_4b89a2d9_9 -s FAR67234_pass_4b89a2d9_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_0 -s FAR69833_pass_36c92af7_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_100 -s FAR69833_pass_36c92af7_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_101 -s FAR69833_pass_36c92af7_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_102 -s FAR69833_pass_36c92af7_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_103 -s FAR69833_pass_36c92af7_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_104 -s FAR69833_pass_36c92af7_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_105 -s FAR69833_pass_36c92af7_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_106 -s FAR69833_pass_36c92af7_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_107 -s FAR69833_pass_36c92af7_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_108 -s FAR69833_pass_36c92af7_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_109 -s FAR69833_pass_36c92af7_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_10 -s FAR69833_pass_36c92af7_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_110 -s FAR69833_pass_36c92af7_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_111 -s FAR69833_pass_36c92af7_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_112 -s FAR69833_pass_36c92af7_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_113 -s FAR69833_pass_36c92af7_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_114 -s FAR69833_pass_36c92af7_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_115 -s FAR69833_pass_36c92af7_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_116 -s FAR69833_pass_36c92af7_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_117 -s FAR69833_pass_36c92af7_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_118 -s FAR69833_pass_36c92af7_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_119 -s FAR69833_pass_36c92af7_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_11 -s FAR69833_pass_36c92af7_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_120 -s FAR69833_pass_36c92af7_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_121 -s FAR69833_pass_36c92af7_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_122 -s FAR69833_pass_36c92af7_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_123 -s FAR69833_pass_36c92af7_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_124 -s FAR69833_pass_36c92af7_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_125 -s FAR69833_pass_36c92af7_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_126 -s FAR69833_pass_36c92af7_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_127 -s FAR69833_pass_36c92af7_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_128 -s FAR69833_pass_36c92af7_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_129 -s FAR69833_pass_36c92af7_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_12 -s FAR69833_pass_36c92af7_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_130 -s FAR69833_pass_36c92af7_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_131 -s FAR69833_pass_36c92af7_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_132 -s FAR69833_pass_36c92af7_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_133 -s FAR69833_pass_36c92af7_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_134 -s FAR69833_pass_36c92af7_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_135 -s FAR69833_pass_36c92af7_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_136 -s FAR69833_pass_36c92af7_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_137 -s FAR69833_pass_36c92af7_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_138 -s FAR69833_pass_36c92af7_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_139 -s FAR69833_pass_36c92af7_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_13 -s FAR69833_pass_36c92af7_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_140 -s FAR69833_pass_36c92af7_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_141 -s FAR69833_pass_36c92af7_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_142 -s FAR69833_pass_36c92af7_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_143 -s FAR69833_pass_36c92af7_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_144 -s FAR69833_pass_36c92af7_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_145 -s FAR69833_pass_36c92af7_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_146 -s FAR69833_pass_36c92af7_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_147 -s FAR69833_pass_36c92af7_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_148 -s FAR69833_pass_36c92af7_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_149 -s FAR69833_pass_36c92af7_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_14 -s FAR69833_pass_36c92af7_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_150 -s FAR69833_pass_36c92af7_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_151 -s FAR69833_pass_36c92af7_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_152 -s FAR69833_pass_36c92af7_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_153 -s FAR69833_pass_36c92af7_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_154 -s FAR69833_pass_36c92af7_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_155 -s FAR69833_pass_36c92af7_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_156 -s FAR69833_pass_36c92af7_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_157 -s FAR69833_pass_36c92af7_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_158 -s FAR69833_pass_36c92af7_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_159 -s FAR69833_pass_36c92af7_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_15 -s FAR69833_pass_36c92af7_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_160 -s FAR69833_pass_36c92af7_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_161 -s FAR69833_pass_36c92af7_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_162 -s FAR69833_pass_36c92af7_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_163 -s FAR69833_pass_36c92af7_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_164 -s FAR69833_pass_36c92af7_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_165 -s FAR69833_pass_36c92af7_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_166 -s FAR69833_pass_36c92af7_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_167 -s FAR69833_pass_36c92af7_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_168 -s FAR69833_pass_36c92af7_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_169 -s FAR69833_pass_36c92af7_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_16 -s FAR69833_pass_36c92af7_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_170 -s FAR69833_pass_36c92af7_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_171 -s FAR69833_pass_36c92af7_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_172 -s FAR69833_pass_36c92af7_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_17 -s FAR69833_pass_36c92af7_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_18 -s FAR69833_pass_36c92af7_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_19 -s FAR69833_pass_36c92af7_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_1 -s FAR69833_pass_36c92af7_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_20 -s FAR69833_pass_36c92af7_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_21 -s FAR69833_pass_36c92af7_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_22 -s FAR69833_pass_36c92af7_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_23 -s FAR69833_pass_36c92af7_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_24 -s FAR69833_pass_36c92af7_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_25 -s FAR69833_pass_36c92af7_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_26 -s FAR69833_pass_36c92af7_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_27 -s FAR69833_pass_36c92af7_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_28 -s FAR69833_pass_36c92af7_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_29 -s FAR69833_pass_36c92af7_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_2 -s FAR69833_pass_36c92af7_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_30 -s FAR69833_pass_36c92af7_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_31 -s FAR69833_pass_36c92af7_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_32 -s FAR69833_pass_36c92af7_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_33 -s FAR69833_pass_36c92af7_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_34 -s FAR69833_pass_36c92af7_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_35 -s FAR69833_pass_36c92af7_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_36 -s FAR69833_pass_36c92af7_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_37 -s FAR69833_pass_36c92af7_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_38 -s FAR69833_pass_36c92af7_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_39 -s FAR69833_pass_36c92af7_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_3 -s FAR69833_pass_36c92af7_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_40 -s FAR69833_pass_36c92af7_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_41 -s FAR69833_pass_36c92af7_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_42 -s FAR69833_pass_36c92af7_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_43 -s FAR69833_pass_36c92af7_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_44 -s FAR69833_pass_36c92af7_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_45 -s FAR69833_pass_36c92af7_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_46 -s FAR69833_pass_36c92af7_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_47 -s FAR69833_pass_36c92af7_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_48 -s FAR69833_pass_36c92af7_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_49 -s FAR69833_pass_36c92af7_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_4 -s FAR69833_pass_36c92af7_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_50 -s FAR69833_pass_36c92af7_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_51 -s FAR69833_pass_36c92af7_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_52 -s FAR69833_pass_36c92af7_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_53 -s FAR69833_pass_36c92af7_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_54 -s FAR69833_pass_36c92af7_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_55 -s FAR69833_pass_36c92af7_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_56 -s FAR69833_pass_36c92af7_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_57 -s FAR69833_pass_36c92af7_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_58 -s FAR69833_pass_36c92af7_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_59 -s FAR69833_pass_36c92af7_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_5 -s FAR69833_pass_36c92af7_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_60 -s FAR69833_pass_36c92af7_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_61 -s FAR69833_pass_36c92af7_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_62 -s FAR69833_pass_36c92af7_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_63 -s FAR69833_pass_36c92af7_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_64 -s FAR69833_pass_36c92af7_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_65 -s FAR69833_pass_36c92af7_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_66 -s FAR69833_pass_36c92af7_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_67 -s FAR69833_pass_36c92af7_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_68 -s FAR69833_pass_36c92af7_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_69 -s FAR69833_pass_36c92af7_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_6 -s FAR69833_pass_36c92af7_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_70 -s FAR69833_pass_36c92af7_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_71 -s FAR69833_pass_36c92af7_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_72 -s FAR69833_pass_36c92af7_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_73 -s FAR69833_pass_36c92af7_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_74 -s FAR69833_pass_36c92af7_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_75 -s FAR69833_pass_36c92af7_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_76 -s FAR69833_pass_36c92af7_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_77 -s FAR69833_pass_36c92af7_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_78 -s FAR69833_pass_36c92af7_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_79 -s FAR69833_pass_36c92af7_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_7 -s FAR69833_pass_36c92af7_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_80 -s FAR69833_pass_36c92af7_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_81 -s FAR69833_pass_36c92af7_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_82 -s FAR69833_pass_36c92af7_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_83 -s FAR69833_pass_36c92af7_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_84 -s FAR69833_pass_36c92af7_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_85 -s FAR69833_pass_36c92af7_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_86 -s FAR69833_pass_36c92af7_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_87 -s FAR69833_pass_36c92af7_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_88 -s FAR69833_pass_36c92af7_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_89 -s FAR69833_pass_36c92af7_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_8 -s FAR69833_pass_36c92af7_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_90 -s FAR69833_pass_36c92af7_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_91 -s FAR69833_pass_36c92af7_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_92 -s FAR69833_pass_36c92af7_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_93 -s FAR69833_pass_36c92af7_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_94 -s FAR69833_pass_36c92af7_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_95 -s FAR69833_pass_36c92af7_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_96 -s FAR69833_pass_36c92af7_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_97 -s FAR69833_pass_36c92af7_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_98 -s FAR69833_pass_36c92af7_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_99 -s FAR69833_pass_36c92af7_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69833_pass_36c92af7_9 -s FAR69833_pass_36c92af7_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_0 -s FAR69866_pass_869a5643_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_100 -s FAR69866_pass_869a5643_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_101 -s FAR69866_pass_869a5643_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_102 -s FAR69866_pass_869a5643_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_103 -s FAR69866_pass_869a5643_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_104 -s FAR69866_pass_869a5643_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_105 -s FAR69866_pass_869a5643_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_106 -s FAR69866_pass_869a5643_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_107 -s FAR69866_pass_869a5643_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_108 -s FAR69866_pass_869a5643_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_109 -s FAR69866_pass_869a5643_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_10 -s FAR69866_pass_869a5643_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_110 -s FAR69866_pass_869a5643_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_111 -s FAR69866_pass_869a5643_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_112 -s FAR69866_pass_869a5643_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_113 -s FAR69866_pass_869a5643_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_114 -s FAR69866_pass_869a5643_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_115 -s FAR69866_pass_869a5643_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_116 -s FAR69866_pass_869a5643_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_117 -s FAR69866_pass_869a5643_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_118 -s FAR69866_pass_869a5643_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_119 -s FAR69866_pass_869a5643_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_11 -s FAR69866_pass_869a5643_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_120 -s FAR69866_pass_869a5643_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_121 -s FAR69866_pass_869a5643_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_122 -s FAR69866_pass_869a5643_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_123 -s FAR69866_pass_869a5643_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_124 -s FAR69866_pass_869a5643_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_125 -s FAR69866_pass_869a5643_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_126 -s FAR69866_pass_869a5643_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_127 -s FAR69866_pass_869a5643_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_128 -s FAR69866_pass_869a5643_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_129 -s FAR69866_pass_869a5643_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_12 -s FAR69866_pass_869a5643_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_130 -s FAR69866_pass_869a5643_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_131 -s FAR69866_pass_869a5643_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_132 -s FAR69866_pass_869a5643_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_133 -s FAR69866_pass_869a5643_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_134 -s FAR69866_pass_869a5643_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_135 -s FAR69866_pass_869a5643_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_136 -s FAR69866_pass_869a5643_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_137 -s FAR69866_pass_869a5643_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_138 -s FAR69866_pass_869a5643_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_139 -s FAR69866_pass_869a5643_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_13 -s FAR69866_pass_869a5643_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_140 -s FAR69866_pass_869a5643_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_141 -s FAR69866_pass_869a5643_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_142 -s FAR69866_pass_869a5643_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_143 -s FAR69866_pass_869a5643_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_14 -s FAR69866_pass_869a5643_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_15 -s FAR69866_pass_869a5643_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_16 -s FAR69866_pass_869a5643_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_17 -s FAR69866_pass_869a5643_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_18 -s FAR69866_pass_869a5643_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_19 -s FAR69866_pass_869a5643_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_1 -s FAR69866_pass_869a5643_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_20 -s FAR69866_pass_869a5643_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_21 -s FAR69866_pass_869a5643_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_22 -s FAR69866_pass_869a5643_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_23 -s FAR69866_pass_869a5643_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_24 -s FAR69866_pass_869a5643_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_25 -s FAR69866_pass_869a5643_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_26 -s FAR69866_pass_869a5643_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_27 -s FAR69866_pass_869a5643_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_28 -s FAR69866_pass_869a5643_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_29 -s FAR69866_pass_869a5643_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_2 -s FAR69866_pass_869a5643_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_30 -s FAR69866_pass_869a5643_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_31 -s FAR69866_pass_869a5643_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_32 -s FAR69866_pass_869a5643_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_33 -s FAR69866_pass_869a5643_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_34 -s FAR69866_pass_869a5643_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_35 -s FAR69866_pass_869a5643_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_36 -s FAR69866_pass_869a5643_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_37 -s FAR69866_pass_869a5643_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_38 -s FAR69866_pass_869a5643_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_39 -s FAR69866_pass_869a5643_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_3 -s FAR69866_pass_869a5643_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_40 -s FAR69866_pass_869a5643_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_41 -s FAR69866_pass_869a5643_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_42 -s FAR69866_pass_869a5643_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_43 -s FAR69866_pass_869a5643_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_44 -s FAR69866_pass_869a5643_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_45 -s FAR69866_pass_869a5643_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_46 -s FAR69866_pass_869a5643_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_47 -s FAR69866_pass_869a5643_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_48 -s FAR69866_pass_869a5643_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_49 -s FAR69866_pass_869a5643_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_4 -s FAR69866_pass_869a5643_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_50 -s FAR69866_pass_869a5643_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_51 -s FAR69866_pass_869a5643_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_52 -s FAR69866_pass_869a5643_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_53 -s FAR69866_pass_869a5643_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_54 -s FAR69866_pass_869a5643_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_55 -s FAR69866_pass_869a5643_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_56 -s FAR69866_pass_869a5643_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_57 -s FAR69866_pass_869a5643_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_58 -s FAR69866_pass_869a5643_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_59 -s FAR69866_pass_869a5643_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_5 -s FAR69866_pass_869a5643_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_60 -s FAR69866_pass_869a5643_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_61 -s FAR69866_pass_869a5643_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_62 -s FAR69866_pass_869a5643_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_63 -s FAR69866_pass_869a5643_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_64 -s FAR69866_pass_869a5643_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_65 -s FAR69866_pass_869a5643_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_66 -s FAR69866_pass_869a5643_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_67 -s FAR69866_pass_869a5643_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_68 -s FAR69866_pass_869a5643_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_69 -s FAR69866_pass_869a5643_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_6 -s FAR69866_pass_869a5643_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_70 -s FAR69866_pass_869a5643_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_71 -s FAR69866_pass_869a5643_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_72 -s FAR69866_pass_869a5643_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_73 -s FAR69866_pass_869a5643_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_74 -s FAR69866_pass_869a5643_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_75 -s FAR69866_pass_869a5643_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_76 -s FAR69866_pass_869a5643_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_77 -s FAR69866_pass_869a5643_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_78 -s FAR69866_pass_869a5643_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_79 -s FAR69866_pass_869a5643_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_7 -s FAR69866_pass_869a5643_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_80 -s FAR69866_pass_869a5643_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_81 -s FAR69866_pass_869a5643_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_82 -s FAR69866_pass_869a5643_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_83 -s FAR69866_pass_869a5643_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_84 -s FAR69866_pass_869a5643_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_85 -s FAR69866_pass_869a5643_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_86 -s FAR69866_pass_869a5643_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_87 -s FAR69866_pass_869a5643_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_88 -s FAR69866_pass_869a5643_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_89 -s FAR69866_pass_869a5643_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_8 -s FAR69866_pass_869a5643_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_90 -s FAR69866_pass_869a5643_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_91 -s FAR69866_pass_869a5643_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_92 -s FAR69866_pass_869a5643_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_93 -s FAR69866_pass_869a5643_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_94 -s FAR69866_pass_869a5643_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_95 -s FAR69866_pass_869a5643_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_96 -s FAR69866_pass_869a5643_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_97 -s FAR69866_pass_869a5643_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_98 -s FAR69866_pass_869a5643_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_99 -s FAR69866_pass_869a5643_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR69866_pass_869a5643_9 -s FAR69866_pass_869a5643_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_0 -s FAR71240_pass_6188c73d_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_100 -s FAR71240_pass_6188c73d_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_101 -s FAR71240_pass_6188c73d_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_102 -s FAR71240_pass_6188c73d_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_103 -s FAR71240_pass_6188c73d_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_104 -s FAR71240_pass_6188c73d_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_105 -s FAR71240_pass_6188c73d_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_106 -s FAR71240_pass_6188c73d_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_107 -s FAR71240_pass_6188c73d_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_108 -s FAR71240_pass_6188c73d_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_109 -s FAR71240_pass_6188c73d_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_10 -s FAR71240_pass_6188c73d_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_110 -s FAR71240_pass_6188c73d_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_111 -s FAR71240_pass_6188c73d_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_112 -s FAR71240_pass_6188c73d_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_113 -s FAR71240_pass_6188c73d_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_114 -s FAR71240_pass_6188c73d_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_115 -s FAR71240_pass_6188c73d_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_116 -s FAR71240_pass_6188c73d_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_117 -s FAR71240_pass_6188c73d_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_118 -s FAR71240_pass_6188c73d_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_119 -s FAR71240_pass_6188c73d_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_11 -s FAR71240_pass_6188c73d_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_120 -s FAR71240_pass_6188c73d_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_121 -s FAR71240_pass_6188c73d_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_122 -s FAR71240_pass_6188c73d_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_123 -s FAR71240_pass_6188c73d_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_124 -s FAR71240_pass_6188c73d_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_125 -s FAR71240_pass_6188c73d_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_126 -s FAR71240_pass_6188c73d_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_127 -s FAR71240_pass_6188c73d_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_128 -s FAR71240_pass_6188c73d_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_129 -s FAR71240_pass_6188c73d_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_12 -s FAR71240_pass_6188c73d_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_130 -s FAR71240_pass_6188c73d_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_131 -s FAR71240_pass_6188c73d_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_132 -s FAR71240_pass_6188c73d_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_133 -s FAR71240_pass_6188c73d_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_134 -s FAR71240_pass_6188c73d_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_135 -s FAR71240_pass_6188c73d_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_136 -s FAR71240_pass_6188c73d_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_137 -s FAR71240_pass_6188c73d_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_138 -s FAR71240_pass_6188c73d_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_139 -s FAR71240_pass_6188c73d_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_13 -s FAR71240_pass_6188c73d_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_140 -s FAR71240_pass_6188c73d_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_141 -s FAR71240_pass_6188c73d_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_142 -s FAR71240_pass_6188c73d_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_143 -s FAR71240_pass_6188c73d_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_144 -s FAR71240_pass_6188c73d_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_145 -s FAR71240_pass_6188c73d_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_146 -s FAR71240_pass_6188c73d_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_147 -s FAR71240_pass_6188c73d_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_148 -s FAR71240_pass_6188c73d_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_149 -s FAR71240_pass_6188c73d_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_14 -s FAR71240_pass_6188c73d_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_150 -s FAR71240_pass_6188c73d_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_151 -s FAR71240_pass_6188c73d_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_152 -s FAR71240_pass_6188c73d_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_153 -s FAR71240_pass_6188c73d_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_154 -s FAR71240_pass_6188c73d_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_155 -s FAR71240_pass_6188c73d_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_156 -s FAR71240_pass_6188c73d_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_157 -s FAR71240_pass_6188c73d_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_158 -s FAR71240_pass_6188c73d_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_159 -s FAR71240_pass_6188c73d_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_15 -s FAR71240_pass_6188c73d_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_160 -s FAR71240_pass_6188c73d_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_161 -s FAR71240_pass_6188c73d_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_162 -s FAR71240_pass_6188c73d_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_163 -s FAR71240_pass_6188c73d_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_164 -s FAR71240_pass_6188c73d_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_165 -s FAR71240_pass_6188c73d_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_166 -s FAR71240_pass_6188c73d_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_167 -s FAR71240_pass_6188c73d_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_168 -s FAR71240_pass_6188c73d_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_169 -s FAR71240_pass_6188c73d_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_16 -s FAR71240_pass_6188c73d_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_170 -s FAR71240_pass_6188c73d_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_171 -s FAR71240_pass_6188c73d_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_172 -s FAR71240_pass_6188c73d_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_173 -s FAR71240_pass_6188c73d_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_174 -s FAR71240_pass_6188c73d_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_175 -s FAR71240_pass_6188c73d_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_176 -s FAR71240_pass_6188c73d_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_177 -s FAR71240_pass_6188c73d_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_17 -s FAR71240_pass_6188c73d_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_18 -s FAR71240_pass_6188c73d_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_19 -s FAR71240_pass_6188c73d_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_1 -s FAR71240_pass_6188c73d_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_20 -s FAR71240_pass_6188c73d_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_21 -s FAR71240_pass_6188c73d_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_22 -s FAR71240_pass_6188c73d_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_23 -s FAR71240_pass_6188c73d_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_24 -s FAR71240_pass_6188c73d_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_25 -s FAR71240_pass_6188c73d_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_26 -s FAR71240_pass_6188c73d_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_27 -s FAR71240_pass_6188c73d_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_28 -s FAR71240_pass_6188c73d_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_29 -s FAR71240_pass_6188c73d_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_2 -s FAR71240_pass_6188c73d_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_30 -s FAR71240_pass_6188c73d_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_31 -s FAR71240_pass_6188c73d_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_32 -s FAR71240_pass_6188c73d_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_33 -s FAR71240_pass_6188c73d_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_34 -s FAR71240_pass_6188c73d_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_35 -s FAR71240_pass_6188c73d_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_36 -s FAR71240_pass_6188c73d_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_37 -s FAR71240_pass_6188c73d_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_38 -s FAR71240_pass_6188c73d_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_39 -s FAR71240_pass_6188c73d_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_3 -s FAR71240_pass_6188c73d_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_40 -s FAR71240_pass_6188c73d_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_41 -s FAR71240_pass_6188c73d_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_42 -s FAR71240_pass_6188c73d_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_43 -s FAR71240_pass_6188c73d_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_44 -s FAR71240_pass_6188c73d_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_45 -s FAR71240_pass_6188c73d_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_46 -s FAR71240_pass_6188c73d_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_47 -s FAR71240_pass_6188c73d_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_48 -s FAR71240_pass_6188c73d_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_49 -s FAR71240_pass_6188c73d_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_4 -s FAR71240_pass_6188c73d_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_50 -s FAR71240_pass_6188c73d_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_51 -s FAR71240_pass_6188c73d_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_52 -s FAR71240_pass_6188c73d_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_53 -s FAR71240_pass_6188c73d_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_54 -s FAR71240_pass_6188c73d_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_55 -s FAR71240_pass_6188c73d_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_56 -s FAR71240_pass_6188c73d_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_57 -s FAR71240_pass_6188c73d_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_58 -s FAR71240_pass_6188c73d_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_59 -s FAR71240_pass_6188c73d_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_5 -s FAR71240_pass_6188c73d_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_60 -s FAR71240_pass_6188c73d_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_61 -s FAR71240_pass_6188c73d_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_62 -s FAR71240_pass_6188c73d_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_63 -s FAR71240_pass_6188c73d_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_64 -s FAR71240_pass_6188c73d_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_65 -s FAR71240_pass_6188c73d_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_66 -s FAR71240_pass_6188c73d_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_67 -s FAR71240_pass_6188c73d_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_68 -s FAR71240_pass_6188c73d_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_69 -s FAR71240_pass_6188c73d_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_6 -s FAR71240_pass_6188c73d_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_70 -s FAR71240_pass_6188c73d_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_71 -s FAR71240_pass_6188c73d_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_72 -s FAR71240_pass_6188c73d_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_73 -s FAR71240_pass_6188c73d_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_74 -s FAR71240_pass_6188c73d_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_75 -s FAR71240_pass_6188c73d_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_76 -s FAR71240_pass_6188c73d_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_77 -s FAR71240_pass_6188c73d_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_78 -s FAR71240_pass_6188c73d_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_79 -s FAR71240_pass_6188c73d_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_7 -s FAR71240_pass_6188c73d_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_80 -s FAR71240_pass_6188c73d_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_81 -s FAR71240_pass_6188c73d_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_82 -s FAR71240_pass_6188c73d_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_83 -s FAR71240_pass_6188c73d_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_84 -s FAR71240_pass_6188c73d_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_85 -s FAR71240_pass_6188c73d_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_86 -s FAR71240_pass_6188c73d_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_87 -s FAR71240_pass_6188c73d_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_88 -s FAR71240_pass_6188c73d_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_89 -s FAR71240_pass_6188c73d_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_8 -s FAR71240_pass_6188c73d_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_90 -s FAR71240_pass_6188c73d_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_91 -s FAR71240_pass_6188c73d_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_92 -s FAR71240_pass_6188c73d_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_93 -s FAR71240_pass_6188c73d_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_94 -s FAR71240_pass_6188c73d_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_95 -s FAR71240_pass_6188c73d_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_96 -s FAR71240_pass_6188c73d_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_97 -s FAR71240_pass_6188c73d_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_98 -s FAR71240_pass_6188c73d_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_99 -s FAR71240_pass_6188c73d_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i FAR71240_pass_6188c73d_9 -s FAR71240_pass_6188c73d_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none