/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_0 -s bs_rep_3_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_100 -s bs_rep_3_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_101 -s bs_rep_3_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_102 -s bs_rep_3_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_103 -s bs_rep_3_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_104 -s bs_rep_3_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_105 -s bs_rep_3_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_106 -s bs_rep_3_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_107 -s bs_rep_3_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_108 -s bs_rep_3_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_109 -s bs_rep_3_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_10 -s bs_rep_3_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_110 -s bs_rep_3_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_111 -s bs_rep_3_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_112 -s bs_rep_3_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_113 -s bs_rep_3_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_114 -s bs_rep_3_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_115 -s bs_rep_3_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_116 -s bs_rep_3_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_117 -s bs_rep_3_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_118 -s bs_rep_3_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_119 -s bs_rep_3_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_11 -s bs_rep_3_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_12 -s bs_rep_3_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_13 -s bs_rep_3_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_14 -s bs_rep_3_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_15 -s bs_rep_3_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_16 -s bs_rep_3_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_17 -s bs_rep_3_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_18 -s bs_rep_3_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_19 -s bs_rep_3_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_1 -s bs_rep_3_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_20 -s bs_rep_3_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_21 -s bs_rep_3_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_22 -s bs_rep_3_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_23 -s bs_rep_3_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_24 -s bs_rep_3_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_25 -s bs_rep_3_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_26 -s bs_rep_3_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_27 -s bs_rep_3_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_28 -s bs_rep_3_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_29 -s bs_rep_3_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_2 -s bs_rep_3_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_30 -s bs_rep_3_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_31 -s bs_rep_3_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_32 -s bs_rep_3_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_33 -s bs_rep_3_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_34 -s bs_rep_3_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_35 -s bs_rep_3_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_36 -s bs_rep_3_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_37 -s bs_rep_3_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_38 -s bs_rep_3_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_39 -s bs_rep_3_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_3 -s bs_rep_3_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_40 -s bs_rep_3_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_41 -s bs_rep_3_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_42 -s bs_rep_3_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_43 -s bs_rep_3_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_44 -s bs_rep_3_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_45 -s bs_rep_3_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_46 -s bs_rep_3_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_47 -s bs_rep_3_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_48 -s bs_rep_3_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_49 -s bs_rep_3_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_4 -s bs_rep_3_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_50 -s bs_rep_3_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_51 -s bs_rep_3_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_52 -s bs_rep_3_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_53 -s bs_rep_3_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_54 -s bs_rep_3_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_55 -s bs_rep_3_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_56 -s bs_rep_3_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_57 -s bs_rep_3_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_58 -s bs_rep_3_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_59 -s bs_rep_3_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_5 -s bs_rep_3_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_60 -s bs_rep_3_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_61 -s bs_rep_3_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_62 -s bs_rep_3_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_63 -s bs_rep_3_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_64 -s bs_rep_3_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_65 -s bs_rep_3_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_66 -s bs_rep_3_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_67 -s bs_rep_3_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_68 -s bs_rep_3_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_69 -s bs_rep_3_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_6 -s bs_rep_3_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_70 -s bs_rep_3_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_71 -s bs_rep_3_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_72 -s bs_rep_3_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_73 -s bs_rep_3_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_74 -s bs_rep_3_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_75 -s bs_rep_3_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_76 -s bs_rep_3_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_77 -s bs_rep_3_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_78 -s bs_rep_3_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_79 -s bs_rep_3_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_7 -s bs_rep_3_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_80 -s bs_rep_3_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_81 -s bs_rep_3_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_82 -s bs_rep_3_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_83 -s bs_rep_3_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_84 -s bs_rep_3_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_85 -s bs_rep_3_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_86 -s bs_rep_3_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_87 -s bs_rep_3_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_88 -s bs_rep_3_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_89 -s bs_rep_3_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_8 -s bs_rep_3_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_90 -s bs_rep_3_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_91 -s bs_rep_3_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_92 -s bs_rep_3_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_93 -s bs_rep_3_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_94 -s bs_rep_3_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_95 -s bs_rep_3_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_96 -s bs_rep_3_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_97 -s bs_rep_3_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_98 -s bs_rep_3_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_99 -s bs_rep_3_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i bs_rep_3_9 -s bs_rep_3_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none