/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_0 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_10 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_11 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_12 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_13 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_14 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_15 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_16 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_17 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_18 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_19 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_1 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_20 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_21 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_22 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_23 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_24 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_25 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_26 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_27 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_28 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_29 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_2 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_30 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_31 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_32 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_33 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_34 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_35 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_36 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_37 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_38 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_39 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_3 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_40 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_41 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_42 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_43 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_44 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_45 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_46 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_47 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_48 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_49 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_4 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_50 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_51 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_52 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_53 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_54 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_55 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_56 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_57 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_58 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_59 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_5 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_60 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_61 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_62 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_63 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_64 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_65 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_66 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_67 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_68 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_69 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_6 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_70 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_71 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_72 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_73 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_74 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_75 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_76 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_77 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_78 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_79 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_7 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_80 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_81 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_82 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_83 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_8 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_9 -s trypanosoma_PCF2_scerevisiae_tuberculosis_spike-FAQ10607_2d128d00_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_0 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_100 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_101 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_102 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_103 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_104 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_105 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_106 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_107 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_108 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_109 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_10 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_110 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_111 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_112 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_113 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_114 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_115 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_116 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_117 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_118 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_119 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_11 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_120 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_121 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_122 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_123 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_124 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_125 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_126 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_127 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_128 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_129 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_12 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_130 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_131 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_132 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_133 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_134 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_135 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_136 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_137 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_138 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_139 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_13 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_140 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_141 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_142 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_143 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_144 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_145 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_146 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_147 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_148 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_149 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_14 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_150 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_151 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_152 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_153 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_154 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_155 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_156 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_157 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_158 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_159 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_15 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_160 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_161 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_162 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_163 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_164 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_165 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_166 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_167 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_168 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_169 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_16 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_170 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_171 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_172 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_173 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_174 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_175 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_176 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_177 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_178 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_179 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_17 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_180 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_181 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_182 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_183 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_184 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_185 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_186 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_187 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_188 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_189 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_18 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_190 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_191 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_192 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_193 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_194 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_195 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_196 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_197 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_198 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_199 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_19 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_1 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_200 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_201 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_202 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_203 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_20 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_21 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_22 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_23 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_24 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_25 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_26 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_27 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_28 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_29 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_2 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_30 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_31 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_32 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_33 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_34 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_35 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_36 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_37 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_38 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_39 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_3 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_40 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_41 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_42 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_43 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_44 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_45 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_46 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_47 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_48 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_49 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_4 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_50 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_51 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_52 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_53 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_54 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_55 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_56 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_57 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_58 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_59 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_5 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_60 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_61 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_62 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_63 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_64 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_65 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_66 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_67 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_68 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_69 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_6 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_70 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_71 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_72 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_73 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_74 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_75 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_76 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_77 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_78 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_79 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_7 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_80 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_81 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_82 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_83 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_84 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_85 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_86 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_87 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_88 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_89 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_8 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_90 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_91 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_92 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_93 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_94 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_95 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_96 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_97 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_98 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_99 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_9 -s trypanosoma_BSF2_scerevisiae_tuberculosis_spike-FAQ09382_90222684_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none