/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Brassica_napus-Da-Ae/sequence/GCF_020379485.1_Da-Ae_genomic.transcriptome.fa CHY_AJ_ONT_1_PAE09122_A_fast5.fastq > CHY_AJ_ONT_1_PAE09122_A_fast5.sam 2>&1 | tee CHY_AJ_ONT_1_PAE09122_A_fast5.minimap.logfile.txt