/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1000 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1000-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1001 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1001-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1002 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1002-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1003 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1003-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1004 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1004-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1005 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1005-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1006 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1006-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1007 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1007-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1008 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1008-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1009 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1009-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1010 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1010-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1011 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1011-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1012 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1012-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1013 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1013-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1014 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1014-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1015 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1015-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1016 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1016-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1017 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1017-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1018 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1018-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1019 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1019-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1020 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1020-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1021 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1021-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1022 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1022-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1023 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1023-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1024 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1024-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1025 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1025-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1026 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1026-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1027 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1027-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1028 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1028-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1029 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1029-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1030 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1030-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1031 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1031-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1032 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1032-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1033 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1033-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1034 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1034-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1035 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1035-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1036 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1036-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1037 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1037-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1038 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1038-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1039 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1039-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1040 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1040-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1041 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1041-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1042 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1042-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1043 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1043-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1044 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1044-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1045 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1045-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1046 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1046-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1047 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1047-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1048 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1048-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1049 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1049-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1050 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1050-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1051 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1051-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1052 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1052-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1053 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1053-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1054 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1054-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1055 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1055-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1056 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1056-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1057 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1057-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1058 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1058-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1059 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1059-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1060 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1060-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1061 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1061-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1062 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1062-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1063 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1063-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1064 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1064-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1065 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1065-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1066 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1066-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1067 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1067-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1068 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1068-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1069 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1069-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1070 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1070-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1071 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1071-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1072 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1072-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1073 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1073-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1074 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1074-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1075 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1075-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1076 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1076-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1077 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1077-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1078 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1078-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1079 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1079-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1080 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1080-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1081 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1081-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1082 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1082-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1083 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1083-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1084 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1084-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1085 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1085-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1086 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1086-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1087 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1087-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1088 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1088-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1089 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1089-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1090 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1090-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1091 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1091-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1092 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1092-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1093 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1093-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1094 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1094-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1095 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1095-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1096 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1096-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1097 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1097-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1098 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1098-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1099 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1099-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1297 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1298 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1299 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1300 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1301 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1302 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1303 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1304 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1305 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1306 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1307 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1308 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1309 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1310 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1311 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1312 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1313 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1314 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1315 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1316 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1317 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1318 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1319 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1320 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1321 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1322 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1323 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1324 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1325 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1326 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1327 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1328 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1329 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1330 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1331 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1332 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1333 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1334 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1335 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1336 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1337 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1338 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1339 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1340 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1341 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1342 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1343 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1344 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1345 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1346 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1347 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1348 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1349 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1350 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1351 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1352 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1353 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1354 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1355 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1356 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1357 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1358 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1359 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1360 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1361 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1362 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1363 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1364 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1365 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1366 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1367 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1368 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1369 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1370 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1371 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1372 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1373 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1374 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1375 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1376 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1377 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1378 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1379 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1380 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1381 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1382 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1383 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1384 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1385 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1386 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1387 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1388 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1389 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1390 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1391 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1392 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1393 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1394 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1395 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1396 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1397 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1398 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1399 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1400 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1401 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1402 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1403 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1404 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1405 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1406 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1407 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1408 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1409 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1410 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1411 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1412 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1413 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1414 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1415 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1416 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1417 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1418 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1419 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1420 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1421 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1422 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1423 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1424 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1425 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1426 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1427 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1428 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1429 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1430 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1431 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1432 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1433 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1434 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1435 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1436 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1437 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1438 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1439 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1440 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1441 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1442 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1443 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1444 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1445 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1446 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1447 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1448 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1449 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1450 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1451 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1452 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1453 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1454 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1454-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1455 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1455-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1456 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1456-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1457 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1457-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1458 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1458-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1459 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1459-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1460 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1460-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1461 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1461-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1462 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1462-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1463 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1463-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1464 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1464-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1465 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1465-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1466 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1466-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1467 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1467-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1468 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1468-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1469 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1469-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1470 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1470-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1471 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1471-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1472 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1472-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1473 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1473-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1474 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1474-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1475 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1475-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1476 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1476-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1477 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1477-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1478 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1478-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1479 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1479-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1480 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1480-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1481 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1481-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1482 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1482-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1483 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1483-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1484 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1484-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1485 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1485-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1486 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1486-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1487 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1487-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1488 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1488-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1489 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1489-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1490 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1490-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1491 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1491-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1492 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1492-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1493 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1493-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1494 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1494-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1495 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1495-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1496 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1496-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1497 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1497-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1498 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1498-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1499 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1499-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1500 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1500-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1501 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1501-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1502 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1502-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1503 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1503-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1504 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1504-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1505 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1505-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1506 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1506-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1507 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1507-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1508 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1508-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1509 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1509-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1510 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1510-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1511 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1511-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1512 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1512-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1513 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1513-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1514 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1514-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1515 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1515-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1516 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1516-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1517 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1517-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1518 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1518-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1519 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1519-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1520 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1520-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1521 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1521-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1522 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1522-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1523 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1523-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1524 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1524-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1525 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1525-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1526 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1526-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1527 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1527-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1528 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1528-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1529 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1529-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1530 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1530-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1531 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1531-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1532 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1532-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1533 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1533-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1534 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1534-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1535 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1535-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1536 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1536-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1537 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1537-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1538 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1538-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1539 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1539-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1540 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1540-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1541 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1541-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1542 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1542-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1543 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1543-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1544 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1544-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1545 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1545-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1546 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1546-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1547 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1547-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1548 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1548-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1549 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1549-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1550 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1550-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1551 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1551-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1552 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1552-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1553 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1553-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1554 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1554-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1555 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1555-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1556 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1556-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1557 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1557-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1558 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1558-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1559 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1559-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1560 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1560-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1561 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1561-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1562 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1562-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1563 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1563-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1564 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1564-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1565 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1565-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1566 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1566-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1567 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1567-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1568 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1568-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1569 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1569-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1570 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1570-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1571 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1571-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1572 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1572-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1573 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1573-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1574 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1574-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1575 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1575-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1576 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1576-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1577 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1577-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1578 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1578-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1579 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1579-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1580 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1580-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1581 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1581-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1582 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1582-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1583 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1583-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1584 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1584-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1585 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1585-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1586 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1586-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1587 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1587-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1588 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1588-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1589 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1589-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1590 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1590-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1591 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1591-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1592 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1592-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1593 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1593-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1594 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1594-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1595 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1595-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1596 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1596-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1597 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1597-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1598 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1598-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1599 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1599-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1600 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1600-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1601 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1601-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1602 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1602-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1603 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1603-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1604 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1604-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1605 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1605-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1606 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1606-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1607 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1607-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1608 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1608-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1609 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1609-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1610 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1610-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1611 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1611-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1612 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1612-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1613 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1613-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1614 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1614-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1615 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1615-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1616 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1616-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1617 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1617-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1618 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1618-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1619 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1619-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1620 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1620-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1621 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1621-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1622 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1622-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1623 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1623-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1624 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1624-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1625 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1625-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1626 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1626-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1627 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1627-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1628 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1628-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1629 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1629-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1630 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1630-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1631 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1631-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1632 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1632-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1633 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1633-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1634 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1634-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1635 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1635-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1636 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1636-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1637 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1637-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1638 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1638-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1639 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1639-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1640 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1640-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1641 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1641-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1642 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1642-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1643 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1643-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1644 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1644-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1645 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1645-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1646 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1646-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1647 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1647-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1648 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1648-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1649 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1649-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1650 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1650-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1651 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1651-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1652 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1652-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1653 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1653-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1654 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1654-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1655 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1655-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1656 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1656-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1657 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1657-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1658 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1658-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1659 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1659-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1660 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1660-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1661 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1661-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1662 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1662-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1663 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1663-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1664 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1664-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1665 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1665-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1666 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1666-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1667 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1667-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1668 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1668-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1669 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1669-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1670 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1670-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1671 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1671-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1672 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1672-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1673 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1673-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1674 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1674-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1675 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1675-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1676 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1676-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1677 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1677-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1678 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1678-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1679 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1679-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1680 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1680-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1681 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1681-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1682 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1682-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1683 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1683-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1684 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1684-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1685 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1685-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1686 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1686-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1687 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1687-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1688 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1688-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1689 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1689-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1690 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1690-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1691 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1691-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1692 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1692-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1693 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1693-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1694 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1694-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1695 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1695-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1696 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1696-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1697 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1697-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1698 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1698-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1699 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1699-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1700 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1700-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1701 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1701-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1702 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1702-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1703 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1703-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1704 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1704-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1705 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1705-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1706 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1706-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1707 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1707-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1708 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1708-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1709 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1709-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1710 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1710-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1711 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1711-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1712 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1712-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1713 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1713-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1714 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1714-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1715 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1715-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1716 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1716-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1717 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1717-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1718 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1718-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1719 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1719-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1720 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1720-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1721 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1721-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1722 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1722-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1723 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1723-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1724 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1724-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1725 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1725-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1726 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1726-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1727 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1727-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1728 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1728-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1729 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1729-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1730 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1730-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1731 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1731-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1732 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1732-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1733 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1733-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1734 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1734-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1735 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1735-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1736 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1736-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1737 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1737-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1738 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1738-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1739 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1739-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1740 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1740-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1741 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1741-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1742 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1742-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1743 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1743-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1744 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1744-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1745 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1745-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1746 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1746-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1747 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1747-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1748 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1748-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1749 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1749-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1750 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1750-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1751 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1751-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1752 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1752-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1753 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1753-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1754 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1754-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1755 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1755-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1756 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1756-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1757 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1757-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1758 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1758-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1759 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1759-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1760 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1760-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1761 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1761-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1762 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1762-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1763 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1763-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1764 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1764-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1765 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1765-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1766 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1766-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1767 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1767-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1768 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1768-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1769 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1769-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1770 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1770-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1771 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1771-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1772 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1772-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1773 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1773-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1774 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1774-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1775 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1775-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1776 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1776-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1777 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1777-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1778 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1778-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1779 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1779-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1780 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1780-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1781 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1781-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1782 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1782-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1783 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1783-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1784 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1784-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1785 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1785-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1786 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1786-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1787 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1787-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1788 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1788-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1789 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1789-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1790 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1790-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1791 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1791-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1792 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1792-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1793 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1793-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1794 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1794-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1795 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1795-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1796 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1796-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1797 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1797-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1798 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1798-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1799 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1799-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1800 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1800-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1801 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1801-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1802 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1802-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1803 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1803-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1804 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1804-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1805 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1805-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1806 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1806-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1807 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1807-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1808 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1808-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1809 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1809-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1810 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1810-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1811 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1811-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1812 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1812-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1813 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1813-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1814 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1814-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1815 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1815-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1816 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1816-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1817 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1817-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1818 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1818-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1819 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1819-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1820 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1820-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1821 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1821-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1822 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1822-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1823 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1823-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1824 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1824-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1825 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1825-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1826 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1826-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1827 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1827-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1828 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1828-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1829 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1829-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1830 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1830-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1831 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1831-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1832 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1832-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1833 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1833-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1834 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1834-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1835 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1835-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1836 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1836-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1837 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1837-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1838 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1838-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1839 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1839-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1840 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1840-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1841 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1841-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1842 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1842-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1843 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1843-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1844 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1844-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1845 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1845-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1846 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1846-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1847 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1847-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1848 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1848-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1849 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1849-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1850 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1850-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1851 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1851-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1852 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1852-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1853 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1853-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1854 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1854-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1855 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1855-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1856 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1856-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1857 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1857-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1858 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1858-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1859 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1859-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1860 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1860-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1861 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1861-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1862 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1862-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1863 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1863-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1864 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1864-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1865 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1865-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1866 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1866-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1867 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1867-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1868 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1868-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1869 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1869-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1870 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1870-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1871 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1871-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1872 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1872-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1873 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1873-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1874 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1874-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1875 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1875-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1876 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1876-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1877 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1877-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1878 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1878-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1879 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1879-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1880 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1880-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1881 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1881-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1882 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1882-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1883 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1883-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1884 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1884-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1885 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1885-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1886 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1886-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1887 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1887-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1888 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1888-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1889 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1889-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1890 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1890-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1891 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1891-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1892 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1892-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1893 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1893-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1894 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1894-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1895 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1895-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1896 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1896-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1897 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1897-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1898 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1898-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1899 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1899-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1900 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1900-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1901 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1901-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1902 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1902-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1903 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1903-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1904 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1904-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1905 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1905-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1906 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1906-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1907 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1907-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1908 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1908-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1909 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1909-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1910 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1910-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1911 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1911-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1912 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1912-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1913 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1913-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1914 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1914-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1915 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1915-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1916 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1916-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1917 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1917-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1918 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1918-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1919 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1919-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1920 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1920-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1921 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1921-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1922 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1922-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1923 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1923-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1924 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1924-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1925 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1925-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1926 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1926-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1927 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1927-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1928 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1928-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1929 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1929-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1930 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1930-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1931 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1931-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1932 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1932-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1933 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1933-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1934 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1934-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1935 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1935-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1936 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1936-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1937 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1937-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1938 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1938-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1939 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1939-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1940 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1940-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1941 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1941-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1942 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1942-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1943 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1943-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1944 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1944-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1945 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1945-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1946 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1946-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1947 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1947-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1948 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1948-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1949 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1949-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1950 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1950-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1951 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1951-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1952 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1952-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1953 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1953-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1954 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1954-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1955 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1955-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1956 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1956-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1957 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1957-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1958 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1958-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1959 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1959-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1960 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1960-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1961 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1961-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1962 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1962-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1963 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1963-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1964 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1964-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1965 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1965-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1966 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1966-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1967 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1967-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1968 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1968-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1969 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1969-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1970 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1970-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1971 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1971-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1972 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1972-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1973 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1973-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1974 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1974-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1975 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1975-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1976 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1976-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1977 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1977-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1978 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1978-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1979 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1979-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1980 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1980-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1981 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1981-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1982 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1982-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1983 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1983-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1984 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1984-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1985 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1985-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1986 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1986-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1987 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1987-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1988 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1988-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1989 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1989-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1990 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1990-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1991 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1991-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1992 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1992-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1993 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1993-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1994 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1994-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1995 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1995-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1996 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1996-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1997 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1997-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1998 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1998-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1999 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1999-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2000 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2000-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2001 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2001-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2002 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2002-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2003 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2003-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2004 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2004-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2005 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2005-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2006 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2006-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2007 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2007-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_296 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_297 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_298 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_299 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_300 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_301 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_302 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_303 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_304 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_305 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_306 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_307 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_308 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_309 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_310 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_311 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_312 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_313 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_314 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_315 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_316 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_317 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_318 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_319 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_320 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_321 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_322 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_323 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_324 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_325 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_326 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_327 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_328 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_329 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_330 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_331 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_332 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_333 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_334 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_335 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_336 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_337 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_338 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_339 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_340 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_341 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_342 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_343 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_344 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_345 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_346 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_347 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_348 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_349 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_350 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_351 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_352 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_353 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_354 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_355 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_356 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_357 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_358 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_359 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_360 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_361 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_362 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_363 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_364 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_365 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_366 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_367 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_368 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_369 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_370 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_371 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_372 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_373 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_374 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_375 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_376 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_377 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_378 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_379 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_380 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_381 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_382 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_383 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_384 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_385 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_386 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_387 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_388 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_389 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_390 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_391 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_392 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_393 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_394 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_395 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_396 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_397 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_398 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_399 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_400 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_401 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_402 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_403 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_404 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_405 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_406 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_407 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_408 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_409 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_410 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_411 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_412 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_413 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_414 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_415 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_416 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_417 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_418 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_419 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_420 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_421 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_422 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_423 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_424 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_425 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_426 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_427 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_428 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_429 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_430 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_431 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_432 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_433 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_434 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_435 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_436 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_437 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_438 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_439 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_440 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_441 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_442 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_443 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_444 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_445 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_446 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_447 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_448 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_449 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_450 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_451 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_452 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_453 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_454 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_454-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_455 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_455-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_456 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_456-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_457 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_457-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_458 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_458-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_459 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_459-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_460 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_460-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_461 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_461-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_462 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_462-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_463 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_463-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_464 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_464-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_465 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_465-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_466 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_466-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_467 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_467-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_468 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_468-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_469 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_469-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_470 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_470-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_471 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_471-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_472 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_472-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_473 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_473-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_474 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_474-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_475 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_475-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_476 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_476-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_477 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_477-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_478 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_478-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_479 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_479-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_480 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_480-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_481 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_481-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_482 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_482-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_483 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_483-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_484 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_484-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_485 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_485-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_486 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_486-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_487 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_487-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_488 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_488-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_489 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_489-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_490 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_490-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_491 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_491-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_492 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_492-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_493 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_493-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_494 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_494-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_495 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_495-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_496 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_496-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_497 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_497-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_498 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_498-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_499 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_499-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_500 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_500-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_501 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_501-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_502 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_502-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_503 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_503-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_504 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_504-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_505 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_505-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_506 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_506-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_507 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_507-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_508 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_508-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_509 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_509-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_510 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_510-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_511 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_511-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_512 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_512-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_513 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_513-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_514 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_514-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_515 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_515-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_516 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_516-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_517 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_517-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_518 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_518-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_519 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_519-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_520 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_520-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_521 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_521-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_522 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_522-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_523 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_523-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_524 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_524-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_525 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_525-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_526 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_526-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_527 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_527-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_528 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_528-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_529 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_529-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_530 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_530-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_531 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_531-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_532 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_532-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_533 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_533-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_534 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_534-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_535 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_535-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_536 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_536-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_537 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_537-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_538 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_538-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_539 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_539-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_540 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_540-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_541 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_541-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_542 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_542-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_543 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_543-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_544 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_544-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_545 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_545-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_546 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_546-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_547 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_547-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_548 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_548-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_549 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_549-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_550 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_550-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_551 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_551-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_552 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_552-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_553 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_553-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_554 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_554-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_555 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_555-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_556 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_556-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_557 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_557-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_558 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_558-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_559 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_559-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_560 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_560-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_561 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_561-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_562 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_562-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_563 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_563-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_564 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_564-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_565 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_565-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_566 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_566-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_567 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_567-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_568 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_568-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_569 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_569-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_570 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_570-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_571 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_571-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_572 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_572-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_573 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_573-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_574 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_574-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_575 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_575-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_576 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_576-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_577 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_577-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_578 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_578-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_579 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_579-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_580 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_580-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_581 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_581-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_582 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_582-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_583 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_583-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_584 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_584-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_585 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_585-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_586 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_586-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_587 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_587-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_588 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_588-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_589 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_589-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_590 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_590-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_591 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_591-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_592 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_592-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_593 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_593-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_594 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_594-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_595 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_595-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_596 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_596-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_597 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_597-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_598 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_598-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_599 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_599-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_600 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_600-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_601 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_601-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_602 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_602-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_603 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_603-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_604 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_604-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_605 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_605-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_606 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_606-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_607 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_607-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_608 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_608-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_609 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_609-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_610 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_610-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_611 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_611-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_612 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_612-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_613 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_613-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_614 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_614-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_615 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_615-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_616 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_616-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_617 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_617-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_618 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_618-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_619 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_619-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_620 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_620-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_621 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_621-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_622 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_622-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_623 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_623-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_624 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_624-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_625 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_625-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_626 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_626-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_627 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_627-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_628 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_628-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_629 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_629-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_630 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_630-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_631 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_631-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_632 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_632-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_633 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_633-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_634 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_634-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_635 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_635-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_636 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_636-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_637 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_637-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_638 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_638-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_639 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_639-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_640 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_640-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_641 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_641-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_642 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_642-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_643 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_643-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_644 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_644-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_645 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_645-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_646 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_646-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_647 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_647-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_648 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_648-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_649 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_649-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_650 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_650-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_651 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_651-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_652 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_652-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_653 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_653-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_654 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_654-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_655 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_655-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_656 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_656-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_657 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_657-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_658 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_658-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_659 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_659-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_660 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_660-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_661 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_661-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_662 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_662-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_663 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_663-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_664 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_664-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_665 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_665-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_666 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_666-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_667 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_667-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_668 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_668-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_669 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_669-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_670 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_670-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_671 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_671-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_672 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_672-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_673 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_673-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_674 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_674-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_675 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_675-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_676 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_676-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_677 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_677-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_678 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_678-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_679 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_679-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_680 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_680-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_681 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_681-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_682 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_682-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_683 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_683-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_684 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_684-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_685 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_685-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_686 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_686-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_687 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_687-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_688 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_688-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_689 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_689-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_690 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_690-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_691 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_691-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_692 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_692-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_693 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_693-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_694 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_694-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_695 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_695-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_696 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_696-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_697 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_697-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_698 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_698-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_699 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_699-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_700 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_700-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_701 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_701-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_702 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_702-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_703 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_703-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_704 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_704-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_705 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_705-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_706 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_706-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_707 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_707-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_708 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_708-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_709 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_709-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_710 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_710-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_711 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_711-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_712 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_712-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_713 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_713-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_714 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_714-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_715 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_715-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_716 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_716-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_717 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_717-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_718 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_718-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_719 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_719-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_720 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_720-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_721 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_721-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_722 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_722-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_723 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_723-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_724 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_724-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_725 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_725-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_726 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_726-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_727 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_727-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_728 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_728-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_729 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_729-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_730 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_730-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_731 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_731-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_732 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_732-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_733 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_733-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_734 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_734-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_735 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_735-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_736 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_736-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_737 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_737-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_738 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_738-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_739 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_739-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_740 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_740-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_741 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_741-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_742 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_742-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_743 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_743-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_744 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_744-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_745 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_745-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_746 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_746-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_747 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_747-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_748 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_748-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_749 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_749-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_750 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_750-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_751 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_751-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_752 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_752-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_753 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_753-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_754 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_754-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_755 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_755-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_756 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_756-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_757 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_757-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_758 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_758-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_759 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_759-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_760 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_760-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_761 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_761-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_762 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_762-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_763 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_763-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_764 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_764-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_765 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_765-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_766 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_766-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_767 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_767-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_768 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_768-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_769 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_769-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_770 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_770-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_771 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_771-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_772 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_772-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_773 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_773-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_774 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_774-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_775 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_775-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_776 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_776-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_777 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_777-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_778 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_778-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_779 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_779-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_780 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_780-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_781 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_781-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_782 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_782-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_783 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_783-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_784 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_784-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_785 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_785-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_786 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_786-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_787 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_787-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_788 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_788-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_789 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_789-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_790 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_790-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_791 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_791-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_792 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_792-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_793 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_793-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_794 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_794-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_795 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_795-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_796 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_796-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_797 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_797-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_798 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_798-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_799 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_799-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_800 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_800-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_801 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_801-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_802 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_802-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_803 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_803-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_804 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_804-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_805 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_805-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_806 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_806-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_807 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_807-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_808 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_808-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_809 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_809-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_810 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_810-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_811 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_811-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_812 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_812-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_813 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_813-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_814 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_814-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_815 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_815-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_816 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_816-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_817 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_817-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_818 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_818-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_819 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_819-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_820 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_820-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_821 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_821-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_822 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_822-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_823 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_823-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_824 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_824-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_825 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_825-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_826 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_826-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_827 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_827-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_828 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_828-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_829 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_829-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_830 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_830-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_831 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_831-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_832 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_832-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_833 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_833-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_834 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_834-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_835 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_835-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_836 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_836-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_837 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_837-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_838 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_838-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_839 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_839-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_840 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_840-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_841 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_841-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_842 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_842-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_843 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_843-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_844 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_844-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_845 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_845-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_846 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_846-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_847 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_847-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_848 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_848-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_849 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_849-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_850 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_850-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_851 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_851-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_852 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_852-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_853 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_853-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_854 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_854-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_855 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_855-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_856 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_856-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_857 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_857-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_858 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_858-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_859 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_859-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_860 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_860-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_861 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_861-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_862 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_862-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_863 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_863-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_864 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_864-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_865 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_865-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_866 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_866-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_867 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_867-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_868 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_868-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_869 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_869-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_870 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_870-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_871 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_871-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_872 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_872-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_873 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_873-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_874 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_874-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_875 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_875-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_876 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_876-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_877 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_877-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_878 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_878-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_879 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_879-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_880 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_880-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_881 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_881-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_882 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_882-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_883 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_883-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_884 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_884-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_885 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_885-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_886 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_886-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_887 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_887-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_888 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_888-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_889 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_889-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_890 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_890-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_891 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_891-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_892 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_892-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_893 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_893-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_894 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_894-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_895 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_895-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_896 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_896-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_897 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_897-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_898 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_898-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_899 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_899-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_900 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_900-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_901 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_901-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_902 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_902-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_903 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_903-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_904 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_904-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_905 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_905-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_906 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_906-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_907 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_907-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_908 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_908-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_909 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_909-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_910 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_910-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_911 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_911-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_912 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_912-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_913 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_913-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_914 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_914-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_915 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_915-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_916 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_916-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_917 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_917-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_918 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_918-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_919 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_919-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_920 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_920-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_921 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_921-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_922 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_922-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_923 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_923-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_924 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_924-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_925 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_925-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_926 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_926-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_927 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_927-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_928 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_928-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_929 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_929-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_930 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_930-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_931 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_931-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_932 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_932-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_933 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_933-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_934 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_934-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_935 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_935-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_936 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_936-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_937 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_937-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_938 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_938-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_939 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_939-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_940 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_940-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_941 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_941-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_942 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_942-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_943 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_943-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_944 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_944-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_945 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_945-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_946 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_946-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_947 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_947-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_948 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_948-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_949 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_949-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_950 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_950-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_951 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_951-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_952 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_952-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_953 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_953-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_954 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_954-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_955 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_955-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_956 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_956-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_957 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_957-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_958 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_958-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_959 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_959-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_960 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_960-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_961 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_961-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_962 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_962-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_963 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_963-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_964 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_964-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_965 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_965-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_966 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_966-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_967 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_967-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_968 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_968-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_969 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_969-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_970 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_970-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_971 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_971-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_972 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_972-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_973 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_973-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_974 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_974-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_975 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_975-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_976 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_976-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_977 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_977-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_978 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_978-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_979 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_979-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_980 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_980-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_981 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_981-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_982 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_982-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_983 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_983-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_984 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_984-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_985 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_985-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_986 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_986-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_987 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_987-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_988 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_988-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_989 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_989-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_990 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_990-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_991 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_991-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_992 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_992-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_993 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_993-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_994 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_994-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_995 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_995-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_996 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_996-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_997 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_997-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_998 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_998-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_999 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_999-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/32-Brassica_napus-PRJEB39508/CHY_AJ_ONT_1_PAE09122_A_fast5/env/ig/atelier/nanopore/cns/PSB1000/200220_PSB1000_PAE09122_A/events/fast5_pass/PAE09122_pass_338decb7_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none