/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Mammals/Macaca_mulatta-Mmul_10/GCF_003339765.1_Mmul_10_genomic.transcriptome.fa SVV_RM_A.fastq > SVV_RM_A.sam 2>&1 | tee SVV_RM_A.minimap.logfile.txt