/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_100 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_101 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_102 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_103 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_104 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_105 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_106 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_107 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_108 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_109 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_110 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_111 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_112 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_113 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_114 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_115 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_116 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_117 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_118 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_119 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_120 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_121 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_122 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_123 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_124 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_125 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_126 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_127 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_128 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_129 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_130 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_131 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_132 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_133 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_134 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_135 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_136 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_137 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_138 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_139 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_140 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_141 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_142 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_143 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_144 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_145 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_146 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_147 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_148 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_149 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_150 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_151 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_152 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_153 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_154 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_155 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_156 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_157 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_158 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_159 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_160 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_161 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_162 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_163 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_164 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_165 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_166 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_167 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_168 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_169 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_170 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_171 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_172 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_173 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_174 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_175 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_176 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_177 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_178 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_179 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_180 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_181 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_182 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_183 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_184 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_185 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_186 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_187 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_188 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_189 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_190 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_191 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_192 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_193 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_194 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_195 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_196 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_197 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_198 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_199 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_200 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_201 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_202 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_203 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_204 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_205 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_206 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_207 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_208 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_209 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_210 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_211 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_212 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_213 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_214 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_215 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_216 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_217 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_218 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_219 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_220 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_221 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_222 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_223 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_224 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_225 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_226 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_227 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_228 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_229 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_230 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_231 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_232 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_233 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_234 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_235 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_236 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_237 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_238 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_239 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_240 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_241 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_242 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_243 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_244 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_245 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_246 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_247 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_248 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_249 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_250 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_251 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_252 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_253 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_254 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_255 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_256 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_257 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_258 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_259 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_260 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_261 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_262 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_263 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_264 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_265 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_266 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_267 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_268 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_269 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_270 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_271 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_272 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_273 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_274 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_275 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_276 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_277 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_278 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_279 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_280 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_281 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_282 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_283 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_284 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_285 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_286 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_287 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_288 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_289 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_290 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_291 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_292 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_293 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_294 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_295 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_83 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_84 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_85 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_86 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_87 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_88 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_89 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_90 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_91 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_92 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_93 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_94 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_95 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_96 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_97 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_98 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_99 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/27-Macaca_mulatta-PRJEB42868/SVV_RM_A/gpfs/data/depledgelab/SVV-nanopore/SVV_RM_A/fast5_pass/FAL49801_544d4aaa9b9337b1a63fa825c7dc9def8d345054_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none