/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/bowtie-indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.fa SVV_BSC1-1.fastq > SVV_BSC1-1.sam 2>&1 | tee SVV_BSC1-1.minimap.logfile.txt