/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_0 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_100 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_101 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_102 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_103 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_104 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_105 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_106 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_107 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_108 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_109 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_10 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_110 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_111 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_112 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_113 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_114 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_115 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_116 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_117 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_118 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_119 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_11 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_12 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_13 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_14 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_15 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_16 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_17 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_18 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_19 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_1 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_20 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_21 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_22 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_23 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_24 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_25 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_26 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_27 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_28 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_29 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_2 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_30 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_31 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_32 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_33 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_34 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_35 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_36 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_37 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_38 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_39 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_3 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_40 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_41 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_42 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_43 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_44 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_45 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_46 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_47 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_48 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_49 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_4 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_50 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_51 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_52 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_53 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_54 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_55 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_56 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_57 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_58 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_59 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_5 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_60 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_61 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_62 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_63 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_64 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_65 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_66 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_67 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_68 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_69 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_6 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_70 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_71 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_72 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_73 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_74 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_75 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_76 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_77 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_78 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_79 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_7 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_80 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_81 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_82 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_83 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_84 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_85 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_86 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_87 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_88 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_89 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_8 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_90 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_91 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_92 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_93 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_94 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_95 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_96 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_97 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_98 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_99 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_9 -s SVV_BSC1-1/gpfs/data/depledgelab/SVV-nanopore/SVV_BSC1-1/20201009_1626_MN24978_FAO70175_40f02687/fast5_pass/FAO70175_pass_70ff8f90_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none