/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/bowtie-indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.fa Yeast_S25047_WT_rep1.fastq > Yeast_S25047_WT_rep1.sam 2>&1 | tee Yeast_S25047_WT_rep1.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/bowtie-indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.fa Yeast_S25047_WT_rep2.fastq > Yeast_S25047_WT_rep2.sam 2>&1 | tee Yeast_S25047_WT_rep2.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/bowtie-indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.fa Yeast_S25049_IME4_KO_rep1.fastq > Yeast_S25049_IME4_KO_rep1.sam 2>&1 | tee Yeast_S25049_IME4_KO_rep1.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/bowtie-indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.fa Yeast_S25050_IME4_KO_rep2.fastq > Yeast_S25050_IME4_KO_rep2.sam 2>&1 | tee Yeast_S25050_IME4_KO_rep2.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/bowtie-indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.fa Yeast_S26063_WT_rep3.fastq > Yeast_S26063_WT_rep3.sam 2>&1 | tee Yeast_S26063_WT_rep3.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/bowtie-indexes/Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.fa Yeast_S26064_IME4_KO_rep3.fastq > Yeast_S26064_IME4_KO_rep3.sam 2>&1 | tee Yeast_S26064_IME4_KO_rep3.minimap.logfile.txt