/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_0 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_100 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_101 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_102 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_103 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_104 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_105 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_106 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_107 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_108 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_109 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_10 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_110 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_111 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_112 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_113 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_114 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_115 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_116 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_117 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_118 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_119 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_11 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_120 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_121 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_122 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_123 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_124 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_125 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_126 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_127 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_128 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_129 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_12 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_130 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_131 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_132 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_133 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_134 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_135 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_136 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_137 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_138 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_139 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_13 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_140 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_141 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_142 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_143 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_144 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_145 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_146 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_147 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_148 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_149 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_14 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_150 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_151 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_152 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_153 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_154 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_155 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_156 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_157 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_158 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_159 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_15 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_160 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_161 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_162 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_163 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_164 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_165 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_166 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_167 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_168 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_169 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_16 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_170 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_171 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_172 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_173 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_174 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_175 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_176 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_177 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_178 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_179 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_17 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_180 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_181 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_182 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_183 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_184 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_185 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_186 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_187 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_188 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_189 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_18 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_190 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_191 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_192 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_193 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_194 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_195 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_196 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_197 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_198 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_199 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_19 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_1 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_200 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_201 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_202 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_203 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_204 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_205 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_206 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_207 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_208 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_209 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_20 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_210 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_211 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_212 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_213 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_214 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_215 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_216 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_217 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_218 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_219 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_21 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_220 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_221 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_222 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_223 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_224 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_225 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_226 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_227 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_228 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_229 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_22 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_230 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_231 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_232 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_233 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_234 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_235 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_236 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_237 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_238 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_239 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_23 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_240 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_241 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_242 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_243 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_244 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_245 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_246 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_247 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_248 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_249 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_24 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_250 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_251 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_252 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_253 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_254 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_255 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_256 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_257 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_258 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_259 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_25 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_260 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_261 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_262 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_263 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_264 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_265 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_266 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_267 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_268 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_269 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_26 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_270 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_271 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_272 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_273 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_274 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_275 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_276 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_277 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_278 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_279 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_27 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_280 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_281 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_282 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_283 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_284 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_285 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_286 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_287 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_288 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_289 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_28 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_290 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_291 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_292 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_293 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_294 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_295 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_296 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_297 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_298 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_299 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_29 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_2 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_300 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_301 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_302 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_303 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_304 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_305 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_306 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_307 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_308 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_309 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_30 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_310 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_311 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_312 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_313 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_314 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_315 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_316 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_317 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_318 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_319 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_31 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_320 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_321 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_322 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_323 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_324 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_325 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_326 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_327 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_328 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_329 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_32 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_330 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_331 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_332 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_333 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_334 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_335 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_336 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_337 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_338 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_339 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_33 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_340 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_341 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_342 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_343 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_344 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_345 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_346 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_347 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_348 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_349 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_34 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_350 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_351 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_352 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_353 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_354 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_355 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_356 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_357 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_358 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_359 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_35 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_360 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_361 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_362 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_363 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_364 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_365 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_366 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_367 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_368 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_369 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_36 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_370 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_371 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_372 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_373 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_374 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_375 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_376 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_377 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_378 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_379 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_37 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_380 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_381 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_382 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_383 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_384 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_385 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_386 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_387 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_388 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_389 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_38 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_390 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_391 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_392 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_393 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_394 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_395 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_396 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_397 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_398 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_399 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_39 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_3 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_400 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_401 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_402 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_403 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_404 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_405 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_406 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_407 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_408 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_409 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_40 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_410 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_411 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_412 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_413 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_414 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_415 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_416 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_417 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_418 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_419 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_41 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_420 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_421 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_422 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_423 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_424 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_425 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_426 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_427 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_428 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_429 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_42 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_430 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_431 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_432 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_433 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_434 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_435 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_436 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_437 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_438 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_439 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_43 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_440 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_441 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_442 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_443 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_444 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_445 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_446 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_447 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_448 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_449 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_44 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_450 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_451 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_452 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_453 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_454 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_454-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_455 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_455-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_456 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_456-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_457 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_457-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_458 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_458-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_459 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_459-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_45 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_460 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_460-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_461 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_461-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_462 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_462-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_463 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_463-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_464 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_464-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_465 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_465-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_466 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_466-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_467 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_467-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_468 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_468-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_469 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_469-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_46 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_470 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_470-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_471 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_471-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_472 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_472-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_473 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_473-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_474 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_474-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_475 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_475-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_476 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_476-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_477 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_477-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_478 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_478-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_479 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_479-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_47 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_480 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_480-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_481 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_481-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_482 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_482-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_483 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_483-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_484 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_484-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_485 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_485-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_486 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_486-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_487 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_487-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_488 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_488-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_489 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_489-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_48 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_490 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_490-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_491 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_491-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_492 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_492-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_493 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_493-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_494 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_494-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_495 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_495-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_496 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_496-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_497 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_497-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_498 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_498-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_499 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_499-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_49 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_4 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_500 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_500-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_501 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_501-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_502 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_502-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_503 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_503-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_504 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_504-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_505 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_505-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_506 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_506-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_507 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_507-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_508 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_508-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_509 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_509-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_50 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_510 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_510-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_511 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_511-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_512 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_512-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_513 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_513-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_514 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_514-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_515 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_515-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_516 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_516-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_517 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_517-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_518 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_518-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_519 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_519-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_51 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_520 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_520-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_521 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_521-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_522 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_522-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_523 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_523-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_524 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_524-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_525 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_525-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_526 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_526-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_527 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_527-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_528 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_528-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_529 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_529-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_52 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_530 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_530-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_531 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_531-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_532 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_532-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_533 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_533-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_534 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_534-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_535 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_535-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_536 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_536-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_537 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_537-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_538 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_538-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_539 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_539-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_53 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_540 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_540-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_541 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_541-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_542 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_542-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_543 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_543-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_544 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_544-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_545 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_545-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_546 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_546-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_547 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_547-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_548 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_548-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_549 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_549-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_54 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_550 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_550-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_551 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_551-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_552 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_552-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_553 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_553-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_554 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_554-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_555 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_555-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_556 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_556-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_557 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_557-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_558 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_558-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_559 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_559-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_55 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_560 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_560-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_561 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_561-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_562 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_562-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_563 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_563-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_564 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_564-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_565 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_565-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_566 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_566-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_567 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_567-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_568 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_568-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_569 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_569-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_56 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_570 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_570-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_571 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_571-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_572 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_572-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_573 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_573-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_574 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_574-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_575 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_575-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_576 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_576-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_577 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_577-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_578 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_578-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_579 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_579-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_57 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_580 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_580-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_581 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_581-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_582 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_582-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_583 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_583-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_584 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_584-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_585 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_585-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_586 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_586-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_587 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_587-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_588 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_588-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_589 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_589-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_58 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_590 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_590-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_591 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_591-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_592 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_592-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_593 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_593-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_594 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_594-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_595 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_595-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_596 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_596-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_597 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_597-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_598 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_598-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_599 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_599-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_59 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_5 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_600 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_600-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_601 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_601-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_602 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_602-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_603 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_603-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_604 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_604-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_605 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_605-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_606 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_606-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_607 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_607-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_608 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_608-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_609 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_609-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_60 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_610 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_610-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_611 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_611-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_612 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_612-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_613 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_613-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_614 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_614-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_615 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_615-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_616 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_616-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_617 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_617-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_618 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_618-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_619 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_619-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_61 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_620 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_620-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_621 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_621-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_622 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_622-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_623 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_623-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_624 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_624-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_625 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_625-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_626 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_626-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_627 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_627-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_628 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_628-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_629 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_629-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_62 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_630 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_630-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_631 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_631-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_632 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_632-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_633 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_633-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_634 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_634-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_635 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_635-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_636 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_636-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_637 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_637-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_638 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_638-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_639 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_639-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_63 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_640 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_640-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_641 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_641-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_642 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_642-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_643 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_643-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_644 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_644-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_645 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_645-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_646 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_646-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_647 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_647-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_648 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_648-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_649 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_649-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_64 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_650 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_650-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_651 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_651-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_652 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_652-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_653 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_653-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_654 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_654-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_655 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_655-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_656 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_656-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_657 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_657-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_658 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_658-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_659 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_659-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_65 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_660 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_660-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_661 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_661-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_662 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_662-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_663 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_663-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_664 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_664-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_665 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_665-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_666 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_666-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_667 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_667-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_668 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_668-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_669 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_669-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_66 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_670 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_670-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_671 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_671-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_672 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_672-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_673 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_673-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_674 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_674-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_675 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_675-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_676 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_676-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_677 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_677-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_678 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_678-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_679 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_679-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_67 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_680 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_680-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_681 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_681-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_682 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_682-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_683 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_683-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_684 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_684-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_685 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_685-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_686 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_686-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_687 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_687-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_688 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_688-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_689 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_689-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_68 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_690 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_690-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_691 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_691-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_692 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_692-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_693 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_693-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_694 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_694-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_695 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_695-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_696 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_696-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_697 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_697-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_698 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_698-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_699 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_699-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_69 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_6 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_700 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_700-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_701 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_701-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_702 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_702-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_703 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_703-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_704 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_704-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_705 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_705-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_706 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_706-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_707 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_707-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_708 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_708-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_709 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_709-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_70 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_710 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_710-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_711 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_711-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_712 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_712-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_713 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_713-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_714 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_714-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_715 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_715-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_716 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_716-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_717 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_717-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_718 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_718-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_719 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_719-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_71 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_720 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_720-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_721 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_721-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_722 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_722-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_723 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_723-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_724 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_724-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_725 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_725-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_726 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_726-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_727 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_727-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_728 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_728-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_729 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_729-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_72 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_730 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_730-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_731 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_731-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_732 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_732-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_733 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_733-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_734 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_734-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_735 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_735-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_736 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_736-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_737 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_737-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_738 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_738-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_739 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_739-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_73 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_740 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_740-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_741 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_741-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_742 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_742-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_743 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_743-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_744 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_744-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_745 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_745-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_746 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_746-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_747 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_747-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_748 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_748-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_749 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_749-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_74 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_750 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_750-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_751 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_751-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_752 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_752-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_753 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_753-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_754 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_754-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_755 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_755-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_756 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_756-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_757 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_757-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_758 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_758-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_759 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_759-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_75 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_760 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_760-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_761 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_761-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_762 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_762-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_763 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_763-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_764 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_764-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_765 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_765-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_766 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_766-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_767 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_767-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_768 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_768-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_769 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_769-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_76 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_770 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_770-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_771 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_771-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_772 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_772-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_773 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_773-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_774 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_774-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_775 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_775-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_776 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_776-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_777 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_777-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_778 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_778-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_779 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_779-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_77 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_780 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_780-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_781 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_781-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_782 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_782-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_783 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_783-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_784 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_784-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_785 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_785-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_786 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_786-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_787 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_787-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_788 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_788-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_789 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_789-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_78 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_790 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_790-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_791 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_791-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_792 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_792-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_793 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_793-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_794 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_794-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_795 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_795-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_796 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_796-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_797 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_797-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_798 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_798-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_799 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_799-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_79 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_7 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_800 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_800-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_801 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_801-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_802 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_802-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_803 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_803-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_804 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_804-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_805 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_805-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_806 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_806-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_807 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_807-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_808 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_808-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_809 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_809-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_80 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_810 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_810-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_811 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_811-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_812 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_812-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_813 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_813-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_814 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_814-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_815 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_815-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_816 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_816-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_817 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_817-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_818 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_818-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_819 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_819-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_81 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_820 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_820-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_821 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_821-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_822 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_822-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_823 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_823-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_824 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_824-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_825 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_825-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_826 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_826-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_827 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_827-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_828 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_828-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_829 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_829-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_82 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_830 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_830-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_831 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_831-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_832 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_832-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_833 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_833-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_834 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_834-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_835 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_835-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_836 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_836-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_837 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_837-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_838 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_838-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_839 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_839-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_83 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_840 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_840-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_841 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_841-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_842 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_842-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_843 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_843-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_844 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_844-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_845 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_845-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_846 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_846-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_847 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_847-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_848 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_848-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_849 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_849-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_84 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_850 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_850-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_851 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_851-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_852 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_852-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_853 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_853-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_854 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_854-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_855 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_855-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_856 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_856-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_857 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_857-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_858 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_858-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_859 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_859-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_85 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_860 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_860-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_861 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_861-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_862 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_862-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_863 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_863-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_864 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_864-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_865 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_865-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_866 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_866-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_867 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_867-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_868 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_868-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_869 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_869-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_86 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_870 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_870-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_871 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_871-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_872 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_872-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_873 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_873-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_874 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_874-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_875 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_875-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_876 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_876-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_877 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_877-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_878 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_878-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_879 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_879-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_87 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_880 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_880-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_881 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_881-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_882 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_882-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_883 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_883-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_884 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_884-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_885 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_885-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_886 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_886-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_887 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_887-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_888 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_888-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_889 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_889-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_88 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_890 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_890-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_891 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_891-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_892 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_892-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_893 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_893-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_894 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_894-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_895 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_895-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_896 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_896-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_897 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_897-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_898 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_898-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_899 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_899-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_89 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_8 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_900 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_900-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_901 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_901-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_902 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_902-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_903 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_903-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_904 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_904-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_905 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_905-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_906 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_906-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_907 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_907-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_908 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_908-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_909 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_909-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_90 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_910 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_910-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_911 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_911-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_912 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_912-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_913 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_913-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_914 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_914-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_915 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_915-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_916 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_916-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_917 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_917-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_918 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_918-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_919 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_919-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_91 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_920 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_920-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_921 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_921-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_922 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_922-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_923 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_923-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_924 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_924-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_925 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_925-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_926 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_926-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_92 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_93 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_94 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_95 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_96 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_97 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_98 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_99 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_9 -s Yeast_S25047_WT_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25047_WT_1/fast5_pass/FAL56053_d18979a1cedd248267f7acad68be511192e8c5ee_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_0 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_100 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_101 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_102 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_103 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_104 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_105 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_106 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_107 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_108 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_109 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_10 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_110 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_111 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_112 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_113 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_114 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_115 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_116 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_117 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_118 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_119 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_11 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_120 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_121 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_122 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_123 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_124 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_125 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_126 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_127 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_128 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_129 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_12 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_130 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_131 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_132 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_133 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_134 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_135 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_136 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_137 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_138 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_139 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_13 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_140 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_141 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_142 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_143 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_144 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_145 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_146 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_147 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_148 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_149 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_14 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_150 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_151 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_152 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_153 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_154 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_155 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_156 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_157 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_158 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_159 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_15 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_160 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_161 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_162 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_163 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_164 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_165 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_166 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_167 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_168 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_169 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_16 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_170 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_171 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_172 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_173 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_174 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_175 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_176 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_177 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_178 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_179 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_17 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_180 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_181 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_182 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_183 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_184 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_185 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_186 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_187 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_188 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_189 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_18 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_190 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_191 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_192 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_193 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_194 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_195 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_196 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_197 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_198 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_199 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_19 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_1 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_200 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_201 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_202 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_203 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_204 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_205 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_206 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_207 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_208 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_209 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_20 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_210 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_211 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_212 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_213 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_214 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_215 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_216 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_217 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_218 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_219 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_21 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_220 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_221 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_222 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_223 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_224 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_225 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_226 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_227 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_228 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_229 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_22 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_230 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_231 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_232 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_233 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_234 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_235 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_236 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_237 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_238 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_239 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_23 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_240 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_241 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_242 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_243 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_244 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_245 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_246 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_247 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_248 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_249 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_24 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_250 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_251 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_252 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_253 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_254 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_255 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_256 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_257 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_258 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_259 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_25 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_260 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_261 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_262 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_263 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_264 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_265 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_266 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_267 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_268 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_269 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_26 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_270 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_271 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_272 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_273 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_274 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_275 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_276 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_277 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_278 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_279 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_27 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_280 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_281 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_282 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_283 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_284 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_285 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_286 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_287 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_288 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_289 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_28 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_290 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_291 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_292 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_293 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_294 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_295 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_296 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_297 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_298 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_299 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_29 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_2 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_300 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_301 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_302 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_303 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_304 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_305 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_306 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_307 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_308 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_309 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_30 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_310 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_311 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_312 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_313 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_314 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_315 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_316 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_317 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_318 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_319 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_31 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_320 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_321 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_322 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_323 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_324 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_325 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_326 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_327 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_328 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_329 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_32 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_330 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_331 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_332 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_333 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_334 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_335 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_336 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_337 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_338 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_339 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_33 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_340 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_341 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_342 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_343 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_344 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_345 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_346 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_347 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_348 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_349 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_34 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_350 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_351 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_352 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_353 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_354 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_355 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_356 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_357 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_358 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_359 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_35 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_360 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_361 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_362 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_363 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_364 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_365 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_366 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_367 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_368 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_369 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_36 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_370 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_371 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_372 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_373 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_374 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_375 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_376 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_377 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_378 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_379 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_37 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_380 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_381 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_382 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_383 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_384 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_385 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_386 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_387 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_388 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_389 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_38 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_390 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_391 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_392 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_393 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_394 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_395 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_396 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_397 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_398 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_399 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_39 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_3 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_400 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_401 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_402 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_403 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_404 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_405 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_406 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_407 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_408 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_409 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_40 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_410 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_411 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_412 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_413 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_414 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_415 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_416 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_417 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_418 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_419 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_41 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_420 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_421 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_422 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_423 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_424 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_425 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_426 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_427 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_428 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_429 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_42 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_430 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_431 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_432 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_433 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_434 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_435 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_436 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_437 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_438 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_439 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_43 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_440 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_441 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_442 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_443 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_444 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_445 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_446 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_447 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_448 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_449 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_44 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_450 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_451 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_452 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_453 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_454 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_454-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_455 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_455-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_456 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_456-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_457 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_457-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_458 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_458-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_459 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_459-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_45 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_460 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_460-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_461 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_461-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_462 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_462-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_463 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_463-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_464 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_464-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_465 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_465-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_466 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_466-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_467 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_467-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_468 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_468-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_469 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_469-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_46 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_470 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_470-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_471 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_471-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_472 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_472-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_473 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_473-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_474 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_474-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_475 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_475-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_476 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_476-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_477 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_477-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_478 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_478-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_479 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_479-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_47 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_480 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_480-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_481 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_481-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_482 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_482-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_483 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_483-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_484 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_484-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_485 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_485-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_486 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_486-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_487 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_487-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_488 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_488-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_489 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_489-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_48 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_490 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_490-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_491 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_491-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_492 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_492-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_493 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_493-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_494 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_494-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_495 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_495-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_496 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_496-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_497 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_497-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_498 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_498-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_499 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_499-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_49 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_4 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_500 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_500-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_501 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_501-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_502 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_502-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_503 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_503-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_504 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_504-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_505 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_505-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_506 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_506-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_507 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_507-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_508 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_508-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_509 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_509-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_50 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_510 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_510-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_511 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_511-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_512 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_512-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_513 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_513-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_514 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_514-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_515 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_515-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_516 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_516-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_517 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_517-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_518 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_518-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_519 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_519-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_51 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_520 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_520-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_521 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_521-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_522 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_522-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_523 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_523-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_524 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_524-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_525 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_525-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_526 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_526-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_527 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_527-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_528 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_528-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_529 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_529-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_52 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_530 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_530-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_531 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_531-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_532 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_532-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_533 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_533-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_534 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_534-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_535 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_535-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_536 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_536-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_537 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_537-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_538 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_538-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_539 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_539-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_53 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_540 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_540-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_541 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_541-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_542 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_542-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_543 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_543-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_544 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_544-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_545 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_545-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_546 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_546-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_547 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_547-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_548 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_548-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_549 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_549-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_54 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_550 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_550-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_551 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_551-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_552 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_552-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_553 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_553-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_554 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_554-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_555 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_555-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_556 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_556-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_557 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_557-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_558 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_558-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_559 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_559-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_55 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_560 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_560-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_561 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_561-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_562 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_562-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_563 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_563-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_564 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_564-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_565 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_565-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_566 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_566-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_567 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_567-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_568 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_568-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_569 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_569-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_56 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_570 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_570-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_571 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_571-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_572 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_572-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_573 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_573-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_574 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_574-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_575 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_575-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_576 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_576-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_577 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_577-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_578 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_578-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_579 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_579-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_57 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_580 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_580-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_581 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_581-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_582 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_582-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_583 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_583-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_584 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_584-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_585 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_585-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_586 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_586-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_587 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_587-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_588 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_588-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_589 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_589-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_58 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_590 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_590-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_591 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_591-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_592 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_592-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_593 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_593-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_594 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_594-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_595 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_595-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_596 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_596-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_597 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_597-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_598 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_598-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_599 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_599-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_59 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_5 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_600 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_600-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_601 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_601-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_602 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_602-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_603 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_603-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_604 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_604-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_605 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_605-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_606 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_606-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_607 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_607-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_608 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_608-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_609 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_609-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_60 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_610 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_610-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_611 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_611-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_612 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_612-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_613 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_613-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_614 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_614-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_615 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_615-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_616 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_616-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_617 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_617-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_618 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_618-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_619 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_619-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_61 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_620 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_620-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_621 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_621-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_622 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_622-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_623 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_623-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_62 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_63 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_64 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_65 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_66 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_67 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_68 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_69 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_6 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_70 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_71 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_72 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_73 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_74 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_75 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_76 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_77 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_78 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_79 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_7 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_80 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_81 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_82 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_83 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_84 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_85 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_86 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_87 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_88 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_89 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_8 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_90 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_91 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_92 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_93 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_94 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_95 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_96 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_97 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_98 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_99 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_9 -s Yeast_S25047_WT_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25048_WT_2/fast5_pass/FAL55984_5fa8623587010e4841e7f27358a2cf5427f57673_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_0 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_100 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_101 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_102 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_103 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_104 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_105 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_106 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_107 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_108 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_109 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_10 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_110 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_111 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_112 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_113 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_114 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_115 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_116 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_117 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_118 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_119 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_11 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_120 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_121 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_122 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_123 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_124 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_125 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_126 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_127 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_128 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_129 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_12 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_130 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_131 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_132 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_133 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_134 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_135 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_136 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_137 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_138 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_139 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_13 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_140 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_141 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_142 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_143 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_144 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_145 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_146 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_147 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_148 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_149 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_14 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_150 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_151 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_152 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_153 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_154 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_155 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_156 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_157 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_158 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_159 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_15 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_160 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_161 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_162 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_163 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_164 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_165 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_166 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_167 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_168 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_169 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_16 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_170 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_171 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_172 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_173 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_174 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_175 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_176 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_177 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_178 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_179 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_17 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_180 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_181 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_182 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_183 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_184 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_185 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_186 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_187 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_188 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_189 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_18 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_190 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_191 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_192 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_193 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_194 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_195 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_196 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_197 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_198 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_199 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_19 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_1 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_200 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_201 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_202 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_203 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_204 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_205 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_206 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_207 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_208 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_209 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_20 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_210 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_211 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_212 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_213 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_214 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_215 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_216 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_217 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_218 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_219 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_21 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_220 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_221 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_222 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_223 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_224 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_225 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_226 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_227 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_228 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_229 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_22 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_230 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_231 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_232 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_233 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_234 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_235 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_236 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_237 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_238 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_239 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_23 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_240 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_241 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_242 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_243 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_244 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_245 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_246 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_247 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_248 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_249 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_24 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_250 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_251 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_252 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_253 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_254 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_255 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_256 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_257 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_258 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_259 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_25 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_260 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_261 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_262 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_263 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_264 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_265 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_266 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_267 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_268 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_269 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_26 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_270 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_271 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_272 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_273 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_274 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_275 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_276 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_277 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_278 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_279 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_27 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_280 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_281 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_282 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_283 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_284 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_285 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_286 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_287 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_288 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_289 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_28 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_290 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_291 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_292 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_293 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_294 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_295 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_296 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_297 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_298 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_299 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_29 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_2 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_300 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_301 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_302 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_303 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_304 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_305 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_306 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_307 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_308 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_309 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_30 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_310 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_311 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_312 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_313 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_314 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_315 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_316 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_317 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_318 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_319 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_31 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_320 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_321 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_322 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_323 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_324 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_325 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_326 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_327 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_328 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_329 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_32 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_330 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_331 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_332 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_333 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_334 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_335 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_336 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_337 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_338 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_339 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_33 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_340 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_341 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_342 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_343 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_344 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_345 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_346 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_347 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_348 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_349 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_34 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_350 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_351 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_352 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_353 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_354 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_355 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_356 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_357 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_358 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_359 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_35 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_360 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_361 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_362 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_363 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_364 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_365 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_366 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_367 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_368 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_369 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_36 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_370 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_371 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_372 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_373 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_374 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_375 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_376 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_377 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_378 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_379 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_37 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_380 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_381 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_382 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_383 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_384 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_385 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_386 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_387 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_388 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_389 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_38 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_390 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_391 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_392 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_393 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_394 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_395 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_396 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_397 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_398 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_399 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_39 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_3 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_400 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_401 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_402 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_403 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_404 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_405 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_406 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_407 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_408 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_409 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_40 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_410 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_411 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_412 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_413 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_414 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_415 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_416 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_417 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_418 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_419 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_41 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_420 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_421 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_422 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_423 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_424 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_425 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_426 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_427 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_428 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_429 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_42 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_430 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_431 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_432 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_433 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_434 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_435 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_436 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_437 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_438 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_439 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_43 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_440 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_441 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_442 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_443 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_444 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_445 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_446 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_447 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_448 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_449 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_44 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_450 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_451 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_452 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_453 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_454 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_454-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_455 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_455-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_456 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_456-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_457 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_457-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_458 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_458-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_459 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_459-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_45 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_460 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_460-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_461 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_461-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_462 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_462-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_463 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_463-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_464 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_464-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_465 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_465-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_466 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_466-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_467 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_467-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_468 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_468-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_469 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_469-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_46 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_470 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_470-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_471 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_471-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_472 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_472-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_473 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_473-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_474 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_474-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_475 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_475-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_476 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_476-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_477 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_477-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_478 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_478-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_479 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_479-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_47 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_480 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_480-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_481 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_481-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_482 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_482-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_483 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_483-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_484 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_484-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_485 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_485-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_486 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_486-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_487 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_487-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_488 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_488-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_489 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_489-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_48 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_490 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_490-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_491 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_491-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_492 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_492-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_493 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_493-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_494 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_494-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_495 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_495-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_496 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_496-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_497 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_497-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_498 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_498-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_499 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_499-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_49 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_4 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_500 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_500-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_501 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_501-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_502 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_502-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_503 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_503-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_504 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_504-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_505 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_505-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_506 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_506-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_507 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_507-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_508 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_508-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_509 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_509-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_50 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_510 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_510-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_511 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_511-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_512 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_512-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_513 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_513-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_514 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_514-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_515 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_515-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_516 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_516-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_517 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_517-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_518 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_518-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_519 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_519-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_51 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_520 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_520-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_521 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_521-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_522 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_522-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_523 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_523-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_524 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_524-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_525 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_525-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_526 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_526-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_527 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_527-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_528 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_528-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_529 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_529-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_52 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_530 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_530-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_531 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_531-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_532 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_532-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_533 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_533-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_534 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_534-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_535 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_535-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_536 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_536-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_537 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_537-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_538 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_538-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_539 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_539-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_53 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_540 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_540-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_541 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_541-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_542 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_542-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_543 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_543-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_544 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_544-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_545 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_545-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_546 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_546-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_547 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_547-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_548 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_548-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_549 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_549-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_54 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_550 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_550-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_551 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_551-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_552 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_552-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_553 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_553-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_554 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_554-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_555 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_555-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_556 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_556-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_557 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_557-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_558 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_558-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_559 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_559-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_55 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_560 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_560-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_561 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_561-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_562 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_562-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_563 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_563-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_564 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_564-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_565 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_565-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_566 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_566-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_567 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_567-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_568 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_568-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_569 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_569-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_56 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_570 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_570-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_571 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_571-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_572 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_572-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_573 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_573-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_574 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_574-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_575 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_575-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_576 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_576-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_577 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_577-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_578 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_578-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_579 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_579-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_57 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_580 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_580-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_581 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_581-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_582 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_582-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_583 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_583-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_584 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_584-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_585 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_585-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_586 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_586-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_587 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_587-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_588 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_588-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_589 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_589-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_58 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_590 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_590-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_591 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_591-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_592 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_592-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_593 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_593-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_594 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_594-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_595 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_595-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_596 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_596-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_597 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_597-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_598 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_598-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_599 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_599-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_59 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_5 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_600 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_600-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_601 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_601-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_602 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_602-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_603 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_603-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_604 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_604-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_605 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_605-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_606 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_606-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_607 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_607-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_608 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_608-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_609 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_609-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_60 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_610 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_610-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_611 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_611-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_612 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_612-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_613 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_613-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_614 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_614-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_615 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_615-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_616 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_616-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_617 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_617-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_618 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_618-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_619 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_619-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_61 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_620 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_620-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_621 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_621-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_622 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_622-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_623 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_623-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_624 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_624-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_625 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_625-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_626 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_626-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_627 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_627-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_628 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_628-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_629 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_629-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_62 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_630 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_630-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_631 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_631-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_632 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_632-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_633 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_633-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_634 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_634-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_635 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_635-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_636 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_636-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_637 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_637-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_638 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_638-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_639 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_639-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_63 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_640 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_640-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_641 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_641-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_642 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_642-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_643 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_643-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_644 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_644-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_645 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_645-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_646 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_646-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_647 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_647-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_648 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_648-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_649 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_649-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_64 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_650 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_650-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_651 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_651-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_652 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_652-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_653 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_653-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_654 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_654-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_655 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_655-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_656 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_656-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_657 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_657-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_658 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_658-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_659 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_659-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_65 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_660 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_660-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_661 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_661-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_662 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_662-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_663 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_663-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_664 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_664-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_665 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_665-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_666 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_666-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_667 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_667-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_668 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_668-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_669 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_669-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_66 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_670 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_670-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_671 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_671-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_672 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_672-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_673 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_673-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_674 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_674-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_675 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_675-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_676 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_676-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_677 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_677-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_678 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_678-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_679 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_679-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_67 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_680 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_680-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_681 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_681-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_682 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_682-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_683 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_683-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_684 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_684-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_685 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_685-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_686 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_686-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_687 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_687-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_688 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_688-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_689 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_689-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_68 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_690 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_690-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_691 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_691-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_692 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_692-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_693 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_693-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_694 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_694-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_695 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_695-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_696 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_696-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_697 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_697-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_698 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_698-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_699 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_699-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_69 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_6 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_700 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_700-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_701 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_701-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_702 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_702-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_703 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_703-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_704 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_704-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_705 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_705-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_706 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_706-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_707 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_707-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_708 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_708-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_709 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_709-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_70 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_710 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_710-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_711 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_711-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_712 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_712-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_713 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_713-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_714 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_714-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_715 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_715-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_716 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_716-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_717 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_717-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_718 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_718-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_719 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_719-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_71 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_720 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_720-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_721 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_721-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_722 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_722-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_723 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_723-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_724 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_724-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_725 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_725-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_726 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_726-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_727 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_727-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_728 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_728-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_729 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_729-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_72 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_730 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_730-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_731 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_731-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_732 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_732-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_733 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_733-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_734 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_734-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_735 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_735-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_736 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_736-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_737 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_737-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_738 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_738-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_739 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_739-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_73 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_740 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_740-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_741 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_741-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_742 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_742-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_743 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_743-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_744 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_744-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_745 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_745-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_746 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_746-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_747 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_747-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_748 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_748-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_749 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_749-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_74 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_750 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_750-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_751 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_751-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_752 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_752-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_753 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_753-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_754 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_754-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_755 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_755-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_756 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_756-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_757 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_757-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_758 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_758-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_759 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_759-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_75 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_760 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_760-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_761 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_761-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_762 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_762-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_763 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_763-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_764 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_764-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_765 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_765-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_766 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_766-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_767 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_767-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_768 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_768-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_769 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_769-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_76 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_770 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_770-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_771 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_771-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_772 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_772-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_773 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_773-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_774 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_774-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_775 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_775-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_776 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_776-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_777 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_777-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_778 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_778-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_779 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_779-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_77 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_780 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_780-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_781 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_781-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_782 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_782-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_783 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_783-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_784 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_784-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_785 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_785-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_786 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_786-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_787 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_787-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_788 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_788-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_789 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_789-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_78 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_790 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_790-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_791 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_791-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_792 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_792-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_793 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_793-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_794 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_794-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_795 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_795-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_796 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_796-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_797 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_797-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_798 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_798-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_799 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_799-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_79 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_7 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_800 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_800-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_801 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_801-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_802 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_802-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_803 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_803-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_804 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_804-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_805 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_805-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_806 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_806-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_807 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_807-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_808 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_808-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_809 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_809-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_80 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_810 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_810-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_811 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_811-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_812 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_812-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_813 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_813-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_814 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_814-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_815 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_815-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_816 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_816-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_817 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_817-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_818 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_818-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_819 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_819-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_81 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_820 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_820-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_821 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_821-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_822 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_822-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_823 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_823-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_824 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_824-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_825 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_825-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_826 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_826-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_827 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_827-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_828 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_828-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_829 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_829-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_82 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_830 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_830-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_831 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_831-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_832 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_832-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_833 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_833-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_834 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_834-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_835 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_835-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_836 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_836-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_837 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_837-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_838 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_838-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_839 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_839-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_83 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_840 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_840-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_841 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_841-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_842 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_842-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_843 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_843-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_844 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_844-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_845 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_845-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_846 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_846-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_847 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_847-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_848 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_848-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_849 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_849-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_84 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_850 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_850-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_851 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_851-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_852 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_852-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_853 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_853-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_854 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_854-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_855 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_855-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_856 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_856-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_857 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_857-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_858 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_858-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_859 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_859-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_85 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_860 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_860-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_861 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_861-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_862 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_862-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_863 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_863-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_864 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_864-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_865 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_865-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_866 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_866-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_867 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_867-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_868 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_868-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_869 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_869-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_86 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_870 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_870-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_871 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_871-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_872 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_872-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_873 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_873-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_874 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_874-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_875 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_875-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_876 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_876-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_877 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_877-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_878 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_878-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_879 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_879-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_87 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_880 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_880-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_881 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_881-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_882 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_882-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_883 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_883-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_884 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_884-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_885 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_885-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_886 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_886-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_887 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_887-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_888 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_888-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_889 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_889-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_88 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_890 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_890-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_891 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_891-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_892 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_892-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_893 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_893-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_894 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_894-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_895 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_895-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_896 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_896-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_897 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_897-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_898 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_898-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_899 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_899-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_89 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_8 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_900 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_900-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_901 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_901-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_902 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_902-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_903 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_903-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_904 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_904-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_905 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_905-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_906 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_906-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_907 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_907-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_908 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_908-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_909 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_909-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_90 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_910 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_910-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_911 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_911-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_912 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_912-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_913 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_913-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_914 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_914-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_915 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_915-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_916 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_916-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_91 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_92 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_93 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_94 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_95 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_96 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_97 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_98 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_99 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_9 -s Yeast_S25049_IME4_KO_rep1/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25049_IME4_1/fast5_pass/FAL55675_e0b87eeeec6d399d468a6280907f7260f0b38f2c_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_0 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_100 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_101 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_102 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_103 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_104 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_105 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_106 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_107 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_108 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_109 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_10 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_110 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_111 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_112 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_113 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_114 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_115 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_116 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_117 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_118 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_119 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_11 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_120 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_121 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_122 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_123 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_124 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_125 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_126 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_127 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_128 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_129 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_12 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_130 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_131 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_132 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_133 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_134 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_135 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_136 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_137 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_138 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_139 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_13 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_140 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_141 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_142 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_143 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_144 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_145 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_146 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_147 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_148 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_149 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_14 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_150 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_151 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_152 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_153 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_154 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_155 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_156 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_157 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_158 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_159 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_15 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_160 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_161 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_162 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_163 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_164 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_165 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_166 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_167 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_168 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_169 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_16 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_170 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_171 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_172 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_173 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_174 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_175 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_176 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_177 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_178 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_179 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_17 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_180 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_181 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_182 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_183 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_184 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_185 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_186 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_187 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_188 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_189 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_18 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_190 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_191 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_192 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_193 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_194 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_195 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_196 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_197 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_198 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_199 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_19 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_1 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_200 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_201 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_202 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_203 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_204 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_205 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_206 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_207 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_208 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_209 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_20 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_210 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_211 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_212 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_213 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_214 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_215 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_216 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_217 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_218 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_219 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_21 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_220 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_221 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_222 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_223 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_224 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_225 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_226 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_227 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_228 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_229 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_22 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_230 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_231 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_232 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_233 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_234 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_235 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_236 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_237 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_238 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_239 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_23 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_240 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_241 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_242 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_243 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_244 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_245 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_246 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_247 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_248 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_249 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_24 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_250 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_251 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_252 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_253 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_254 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_255 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_256 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_257 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_258 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_259 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_25 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_260 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_261 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_262 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_263 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_264 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_265 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_266 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_267 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_268 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_269 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_26 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_270 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_271 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_272 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_273 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_274 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_275 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_276 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_277 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_278 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_279 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_27 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_280 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_281 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_282 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_283 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_284 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_285 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_286 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_287 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_288 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_289 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_28 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_290 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_291 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_292 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_293 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_294 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_295 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_296 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_297 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_298 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_299 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_29 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_2 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_300 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_301 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_302 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_303 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_304 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_305 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_306 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_307 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_308 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_309 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_30 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_310 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_311 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_312 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_313 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_314 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_315 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_316 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_317 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_318 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_319 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_31 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_320 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_321 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_322 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_323 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_324 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_325 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_326 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_327 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_328 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_329 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_32 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_330 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_331 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_332 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_333 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_334 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_335 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_336 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_337 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_338 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_339 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_33 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_340 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_341 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_342 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_343 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_344 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_345 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_346 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_347 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_348 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_349 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_34 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_350 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_351 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_352 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_353 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_354 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_355 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_356 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_357 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_358 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_359 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_35 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_360 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_361 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_362 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_363 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_364 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_365 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_366 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_367 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_368 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_369 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_36 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_370 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_371 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_372 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_373 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_374 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_375 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_376 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_377 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_378 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_379 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_37 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_380 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_381 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_382 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_383 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_384 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_385 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_386 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_387 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_388 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_389 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_38 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_390 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_391 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_392 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_393 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_394 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_395 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_396 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_397 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_398 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_399 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_39 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_3 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_400 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_401 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_402 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_403 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_404 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_405 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_406 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_407 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_408 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_409 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_40 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_410 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_411 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_412 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_413 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_414 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_415 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_416 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_417 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_418 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_419 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_41 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_420 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_421 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_422 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_423 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_424 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_425 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_426 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_427 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_42 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_43 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_44 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_45 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_46 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_47 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_48 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_49 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_4 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_50 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_51 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_52 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_53 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_54 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_55 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_56 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_57 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_58 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_59 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_5 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_60 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_61 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_62 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_63 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_64 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_65 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_66 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_67 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_68 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_69 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_6 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_70 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_71 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_72 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_73 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_74 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_75 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_76 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_77 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_78 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_79 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_7 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_80 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_81 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_82 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_83 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_84 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_85 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_86 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_87 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_88 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_89 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_8 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_90 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_91 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_92 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_93 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_94 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_95 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_96 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_97 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_98 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_99 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_9 -s Yeast_S25050_IME4_KO_rep2/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S25050_IME4_2/fast5_pass/FAL55791_2a6b33442885b69c3191879e93748096de92d049_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_0 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_100 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_101 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_102 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_103 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_104 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_105 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_106 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_107 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_108 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_109 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_10 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_110 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_111 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_112 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_113 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_114 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_115 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_116 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_117 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_118 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_119 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_11 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_120 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_121 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_122 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_123 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_124 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_125 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_126 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_127 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_128 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_129 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_12 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_130 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_131 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_132 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_133 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_134 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_135 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_136 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_137 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_138 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_139 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_13 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_140 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_141 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_142 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_143 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_144 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_145 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_146 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_147 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_148 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_149 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_14 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_150 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_151 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_152 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_153 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_154 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_155 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_156 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_157 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_158 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_159 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_15 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_160 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_161 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_162 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_163 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_164 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_165 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_166 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_167 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_168 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_169 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_16 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_170 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_171 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_172 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_173 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_174 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_175 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_176 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_177 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_178 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_179 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_17 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_180 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_181 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_182 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_183 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_184 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_185 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_186 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_187 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_188 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_189 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_18 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_190 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_191 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_192 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_193 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_194 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_195 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_196 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_197 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_198 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_199 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_19 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_1 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_200 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_201 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_202 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_203 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_204 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_205 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_206 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_207 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_208 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_209 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_20 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_210 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_211 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_212 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_213 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_214 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_215 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_216 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_217 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_218 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_219 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_21 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_220 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_221 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_222 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_223 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_224 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_225 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_226 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_227 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_228 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_229 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_22 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_230 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_231 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_232 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_233 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_234 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_235 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_236 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_237 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_238 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_239 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_23 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_240 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_241 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_242 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_243 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_244 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_245 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_246 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_247 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_248 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_249 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_24 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_250 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_251 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_252 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_253 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_254 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_255 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_256 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_257 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_258 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_259 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_25 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_260 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_261 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_262 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_263 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_264 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_265 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_266 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_267 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_268 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_269 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_26 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_270 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_271 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_272 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_273 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_274 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_275 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_276 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_277 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_278 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_279 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_27 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_280 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_281 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_282 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_283 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_284 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_285 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_286 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_287 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_288 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_289 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_28 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_290 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_291 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_292 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_293 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_294 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_295 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_296 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_297 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_298 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_299 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_29 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_2 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_300 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_301 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_302 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_303 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_304 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_305 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_306 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_307 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_308 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_309 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_30 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_310 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_311 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_312 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_313 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_314 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_315 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_316 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_317 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_318 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_319 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_31 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_320 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_321 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_322 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_323 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_324 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_325 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_32 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_33 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_34 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_35 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_36 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_37 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_38 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_39 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_3 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_40 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_41 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_42 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_43 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_44 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_45 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_46 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_47 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_48 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_49 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_4 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_50 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_51 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_52 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_53 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_54 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_55 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_56 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_57 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_58 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_59 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_5 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_60 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_61 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_62 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_63 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_64 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_65 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_66 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_67 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_68 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_69 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_6 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_70 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_71 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_72 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_73 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_74 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_75 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_76 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_77 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_78 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_79 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_7 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_80 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_81 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_82 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_83 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_84 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_85 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_86 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_87 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_88 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_89 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_8 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_90 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_91 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_92 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_93 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_94 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_95 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_96 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_97 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_98 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_99 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_9 -s Yeast_S26063_WT_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26063_WT_3/fast5_pass/FAL55927_1092a59acfdc8d8ecf15942d8df2a6a48f6b3bbf_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_0 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_100 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_101 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_102 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_103 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_104 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_105 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_106 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_107 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_108 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_109 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_10 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_110 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_111 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_112 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_113 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_114 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_115 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_116 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_117 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_118 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_119 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_11 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_120 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_121 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_122 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_123 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_124 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_125 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_126 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_127 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_128 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_129 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_12 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_130 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_131 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_132 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_133 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_134 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_135 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_136 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_137 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_138 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_139 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_13 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_140 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_141 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_142 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_143 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_144 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_145 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_146 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_147 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_148 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_149 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_14 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_150 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_151 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_152 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_153 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_154 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_155 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_156 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_157 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_158 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_159 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_15 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_160 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_161 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_162 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_163 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_164 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_165 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_166 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_167 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_168 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_169 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_16 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_170 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_171 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_172 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_173 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_174 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_175 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_176 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_177 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_178 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_179 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_17 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_180 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_181 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_182 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_183 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_184 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_185 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_186 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_187 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_188 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_189 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_18 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_190 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_191 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_192 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_193 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_194 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_195 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_196 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_197 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_198 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_199 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_19 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_1 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_200 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_201 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_202 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_203 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_204 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_205 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_206 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_207 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_208 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_209 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_20 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_210 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_211 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_212 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_213 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_214 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_215 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_216 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_217 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_218 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_219 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_21 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_220 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_221 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_222 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_223 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_224 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_225 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_226 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_227 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_228 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_229 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_22 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_230 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_231 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_232 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_233 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_234 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_235 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_236 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_237 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_238 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_239 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_23 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_240 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_241 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_242 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_243 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_244 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_245 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_246 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_247 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_248 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_249 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_24 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_250 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_251 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_252 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_253 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_254 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_255 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_256 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_257 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_258 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_259 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_25 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_260 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_261 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_262 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_263 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_264 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_265 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_266 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_267 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_268 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_269 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_26 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_270 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_271 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_272 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_273 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_274 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_275 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_276 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_277 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_278 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_279 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_27 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_280 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_281 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_282 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_283 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_284 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_285 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_286 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_287 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_288 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_289 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_28 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_290 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_291 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_292 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_293 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_294 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_295 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_296 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_297 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_298 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_299 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_29 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_2 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_300 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_301 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_302 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_303 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_304 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_305 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_306 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_307 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_308 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_309 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_30 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_310 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_311 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_312 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_313 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_314 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_315 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_316 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_317 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_318 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_319 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_31 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_320 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_321 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_322 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_323 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_324 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_325 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_326 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_327 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_328 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_329 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_32 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_330 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_331 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_332 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_333 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_334 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_335 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_336 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_337 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_338 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_339 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_33 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_340 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_341 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_342 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_343 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_344 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_345 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_346 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_347 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_348 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_349 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_34 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_350 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_351 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_352 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_353 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_354 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_355 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_356 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_357 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_358 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_359 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_35 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_360 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_361 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_362 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_363 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_364 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_365 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_366 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_367 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_368 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_369 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_36 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_370 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_371 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_372 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_373 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_374 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_375 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_376 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_377 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_378 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_379 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_37 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_380 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_381 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_382 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_383 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_384 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_385 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_386 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_387 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_388 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_389 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_38 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_390 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_391 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_392 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_393 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_394 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_395 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_396 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_397 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_398 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_399 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_39 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_3 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_400 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_401 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_402 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_403 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_404 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_405 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_406 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_407 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_408 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_409 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_40 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_410 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_411 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_412 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_413 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_414 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_415 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_416 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_417 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_418 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_419 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_41 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_42 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_43 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_44 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_45 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_46 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_47 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_48 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_49 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_4 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_50 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_51 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_52 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_53 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_54 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_55 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_56 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_57 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_58 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_59 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_5 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_60 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_61 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_62 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_63 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_64 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_65 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_66 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_67 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_68 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_69 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_6 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_70 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_71 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_72 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_73 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_74 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_75 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_76 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_77 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_78 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_79 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_7 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_80 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_81 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_82 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_83 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_84 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_85 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_86 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_87 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_88 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_89 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_8 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_90 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_91 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_92 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_93 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_94 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_95 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_96 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_97 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_98 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_99 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_9 -s Yeast_S26064_IME4_KO_rep3/hps/research1/birney/users/adrien/nanopore/datasets/NanoCompore_RNA/fast5/S26064_IME4_3/fast5_pass/FAL55308_bab3eb6a3c09823c449ec60405b5b2c6589b974a_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none