single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/0 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/1 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/10 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/11 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/12 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/13 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/14 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/15 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/16 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/17 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/18 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/19 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/2 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/21 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/22 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/23 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/24 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/25 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/26 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/27 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/28 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/29 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/3 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/30 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/31 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/32 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/33 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/34 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/35 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/36 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/37 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/38 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/39 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/4 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/40 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/41 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/42 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/43 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/44 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/45 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/46 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/47 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/48 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/49 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/5 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/50 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/51 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/52 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/53 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/54 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/55 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/56 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/57 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/58 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/59 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/6 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/60 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/61 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/62 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/63 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/64 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/65 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/66 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/67 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/68 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/69 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/7 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/70 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/71 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/72 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/73 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/74 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/75 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/76 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/77 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/78 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/79 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/8 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/80 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/81 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/82 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/83 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/84 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/85 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/86 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/87 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/88 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/89 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/9 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20180715-NPL0183-I1/GA10000/reads/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/90 --filename_base batch_output --batch_size 1000 --recursive &