/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Populus_trichocarpa-Pop_tri_v3/sequence/GCA_000002775.3_Pop_tri_v3_genomic.transcriptome.fa 20180715-NPL0183-I1.fastq > 20180715-NPL0183-I1.sam 2>&1 | tee 20180715-NPL0183-I1.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Populus_trichocarpa-Pop_tri_v3/sequence/GCA_000002775.3_Pop_tri_v3_genomic.transcriptome.fa poplar_guppy_recall.fastq > poplar_guppy_recall.sam 2>&1 | tee poplar_guppy_recall.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/Land_plants/Populus_trichocarpa-Pop_tri_v3/sequence/GCA_000002775.3_Pop_tri_v3_genomic.transcriptome.fa Ptr-WT-SDX-20200827.fastq > Ptr-WT-SDX-20200827.sam 2>&1 | tee Ptr-WT-SDX-20200827.minimap.logfile.txt