/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/0 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/1 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/10 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/11 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/12 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/13 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/14 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/15 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/16 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/17 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/18 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/19 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/2 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/21 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/22 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/23 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/24 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/25 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/26 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/27 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/28 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/29 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/3 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/30 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/31 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/32 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/33 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/34 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/35 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/36 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/37 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/38 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/39 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/4 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/40 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/41 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/42 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/43 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/44 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/45 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/46 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/47 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/48 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/49 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/5 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/50 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/51 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/52 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/53 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/54 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/55 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/56 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/57 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/58 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/59 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/6 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/60 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/61 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/62 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/63 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/64 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/65 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/66 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/67 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/68 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/69 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/7 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/70 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/71 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/72 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/73 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/74 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/75 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/76 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/77 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/78 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/79 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/8 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/80 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/81 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/82 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/83 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/84 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/85 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/86 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/87 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/88 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/89 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/9 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/90 -s  /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/20-Populus_trichocarpa/20180715-NPL0183-I1/90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none