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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_102 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_103 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_104 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_105 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_106 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_107 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_108 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_109 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_10 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_110 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_111 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_112 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_22 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_23 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_24 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_36 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_37 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_38 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_39 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_3 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_40 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_44 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_45 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_46 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_52 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_53 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_54 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_82 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_83 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_84 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_85 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_86 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_87 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_88 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_89 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_8 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_90 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_91 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_92 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_93 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_94 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_95 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_96 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_97 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_98 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_99 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_9 -s 13022019_FAK41746_H9mRNA_unmod_BR2.0/batch_0_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_0 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_100 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_101 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_102 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_103 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_104 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_105 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_106 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_107 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_108 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_109 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_10 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_110 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_111 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_112 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_11 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_12 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_13 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_14 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_15 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_16 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_17 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_18 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_19 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_1 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_20 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_21 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_22 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_23 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_24 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_25 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_26 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_27 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_28 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_29 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_2 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_30 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_31 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_32 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_33 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_34 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_35 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_36 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_37 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_38 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_39 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_3 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_40 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_41 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_42 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_43 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_44 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_45 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_46 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_47 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_48 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_49 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_4 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_50 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_51 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_52 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_53 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_54 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_55 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_56 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_57 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_58 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_59 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_5 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_60 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_61 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_62 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_63 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_64 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_65 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_66 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_67 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_68 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_69 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_6 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_70 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_71 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_72 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_73 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_74 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_75 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_76 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_77 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_78 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_79 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_7 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_80 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_81 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_82 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_83 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_84 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_85 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_86 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_87 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_88 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_89 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_8 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_90 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_91 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_92 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_93 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_94 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_95 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_96 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_97 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_98 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_99 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_9 -s 13022019_FAK41746_H9mRNA_unmod_BR2.1/batch_1_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_0 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_100 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_101 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_102 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_103 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_104 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_105 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_106 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_107 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_108 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_109 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_10 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_110 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_111 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_112 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_113 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_114 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_11 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_12 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_13 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_14 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_15 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_16 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_17 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_18 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_19 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_1 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_20 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_21 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_22 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_23 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_24 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_25 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_26 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_27 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_28 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_29 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_2 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_30 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_31 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_32 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_33 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_34 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_35 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_36 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_37 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_38 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_39 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_3 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_40 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_41 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_42 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_43 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_44 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_45 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_46 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_47 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_48 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_49 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_4 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_50 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_51 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_52 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_53 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_54 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_55 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_56 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_57 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_58 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_59 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_5 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_60 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_61 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_62 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_63 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_64 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_65 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_66 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_67 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_68 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_69 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_6 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_70 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_71 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_72 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_73 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_74 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_75 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_76 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_77 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_78 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_79 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_7 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_80 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_81 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_82 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_83 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_84 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_85 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_86 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_87 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_88 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_89 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_8 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_90 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_91 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_92 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_93 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_94 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_95 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_96 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_97 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_98 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_99 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_9 -s 13022019_FAK41746_H9mRNA_unmod_BR2.2/batch_2_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_0 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_100 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_101 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_102 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_103 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_104 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_105 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_106 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_107 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_108 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_109 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_10 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_110 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_111 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_112 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_113 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_114 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_115 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_116 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_117 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_118 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_119 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_11 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_120 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_121 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_122 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_12 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_13 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_14 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_15 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_16 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_17 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_18 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_19 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_1 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_20 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_21 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_22 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_23 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_24 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_25 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_26 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_27 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_28 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_29 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_2 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_30 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_31 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_32 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_33 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_34 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_35 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_36 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_37 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_38 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_39 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_3 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_40 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_41 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_42 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_43 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_44 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_45 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_46 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_47 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_48 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_49 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_4 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_50 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_51 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_52 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_53 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_54 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_55 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_56 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_57 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_58 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_59 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_5 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_60 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_61 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_62 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_63 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_64 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_65 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_66 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_67 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_68 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_69 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_6 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_70 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_71 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_72 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_73 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_74 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_75 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_76 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_77 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_78 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_79 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_7 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_80 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_81 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_82 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_83 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_84 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_85 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_86 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_87 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_88 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_89 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_8 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_90 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_91 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_92 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_93 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_94 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_95 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_96 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_97 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_98 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_99 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_9 -s 20180714_0635_14072018_FAH64107_H9mRNA_unmod/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_0 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_100 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_101 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_102 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_103 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_104 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_105 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_106 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_107 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_108 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_109 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_10 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_110 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_111 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_112 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_113 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_114 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_115 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_116 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_117 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_118 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_119 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_11 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_120 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_121 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_122 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_123 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_124 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_125 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_126 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_127 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_128 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_129 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_12 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_130 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_131 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_132 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_133 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_134 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_135 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_136 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_137 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_138 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_139 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_13 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_140 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_141 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_142 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_143 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_144 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_145 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_146 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_147 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_148 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_149 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_14 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_150 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_151 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_152 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_153 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_154 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_155 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_156 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_157 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_158 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_159 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_15 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_160 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_161 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_162 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_163 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_164 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_165 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_166 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_167 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_168 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_169 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_16 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_170 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_171 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_172 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_173 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_174 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_175 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_176 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_177 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_178 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_179 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_17 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_180 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_181 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_182 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_183 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_184 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_185 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_186 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_187 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_188 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_189 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_18 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_190 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_191 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_192 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_193 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_194 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_195 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_196 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_197 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_198 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_199 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_19 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_1 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_200 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_201 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_202 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_203 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_204 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_205 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_206 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_207 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_208 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_209 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_20 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_210 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_211 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_212 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_213 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_214 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_215 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_216 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_217 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_218 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_219 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_21 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_220 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_221 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_222 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_223 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_224 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_225 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_226 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_227 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_228 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_229 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_22 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_230 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_231 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_232 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_233 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_234 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_235 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_236 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_237 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_238 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_239 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_23 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_240 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_241 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_242 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_243 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_244 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_245 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_246 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_247 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_248 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_249 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_24 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_250 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_251 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_252 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_253 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_254 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_255 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_256 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_257 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_258 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_259 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_25 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_260 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_261 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_262 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_26 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_27 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_28 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_29 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_2 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_30 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_31 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_32 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_33 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_34 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_35 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_36 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_37 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_38 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_39 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_3 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_40 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_41 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_42 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_43 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_44 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_45 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_46 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_47 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_48 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_49 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_4 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_50 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_51 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_52 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_53 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_54 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_55 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_56 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_57 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_58 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_59 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_5 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_60 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_61 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_62 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_63 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_64 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_65 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_66 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_67 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_68 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_69 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_6 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_70 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_71 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_72 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_73 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_74 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_75 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_76 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_77 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_78 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_79 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_7 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_80 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_81 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_82 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_83 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_84 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_85 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_86 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_87 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_88 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_89 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_8 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_90 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_91 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_92 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_93 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_94 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_95 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_96 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_97 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_98 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_99 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_9 -s 20180714_0639_14072018_FAJ05033_H9mRNA_unmod/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_0 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_100 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_101 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_102 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_103 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_104 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_105 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_106 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_107 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_108 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_109 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_10 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_110 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_111 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_112 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_113 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_114 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_115 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_116 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_117 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_118 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_119 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_11 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_120 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_121 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_122 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_123 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_124 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_125 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_126 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_127 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_128 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_129 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_12 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_130 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_131 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_132 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_133 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_134 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_135 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_136 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_137 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_138 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_139 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_13 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_140 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_141 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_142 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_143 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_144 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_145 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_146 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_147 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_148 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_149 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_14 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_150 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_151 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_152 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_153 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_154 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_155 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_156 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_157 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_158 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_159 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_15 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_160 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_161 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_162 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_163 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_164 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_165 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_166 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_167 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_168 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_169 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_16 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_170 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_171 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_172 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_173 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_174 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_175 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_176 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_177 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_178 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_179 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_17 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_180 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_181 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_182 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_183 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_184 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_185 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_186 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_187 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_188 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_189 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_18 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_190 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_191 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_192 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_193 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_194 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_195 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_196 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_197 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_198 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_199 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_19 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_1 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_200 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_201 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_202 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_203 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_204 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_205 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_206 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_207 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_208 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_209 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_20 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_210 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_211 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_212 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_213 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_214 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_215 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_216 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_217 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_218 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_219 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_21 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_220 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_221 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_222 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_223 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_224 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_225 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_226 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_227 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_228 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_229 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_22 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_23 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_24 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_25 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_26 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_27 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_28 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_29 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_2 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_30 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_31 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_32 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_33 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_34 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_35 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_36 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_37 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_38 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_39 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_3 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_40 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_41 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_42 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_43 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_44 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_45 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_46 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_47 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_48 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_49 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_4 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_50 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_51 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_52 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_53 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_54 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_55 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_56 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_57 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_58 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_59 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_5 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_60 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_61 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_62 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_63 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_64 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_65 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_66 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_67 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_68 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_69 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_6 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_70 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_71 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_72 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_73 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_74 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_75 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_76 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_77 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_78 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_79 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_7 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_80 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_81 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_82 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_83 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_84 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_85 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_86 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_87 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_88 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_89 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_8 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_90 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_91 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_92 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_93 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_94 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_95 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_96 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_97 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_98 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_99 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_9 -s 20180801_1153_01082018_FAJ05273_H9mRNA_unmod_biolineprep/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_0 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_100 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_101 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_102 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_103 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_104 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_105 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_106 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_107 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_108 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_109 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_10 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_110 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_111 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_112 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_113 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_114 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_115 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_116 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_117 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_118 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_119 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_11 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_120 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_121 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_122 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_123 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_124 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_125 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_126 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_127 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_128 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_129 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_12 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_130 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_131 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_132 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_133 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_134 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_135 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_136 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_137 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_138 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_139 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_13 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_140 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_141 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_142 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_143 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_144 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_145 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_146 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_147 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_148 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_149 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_14 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_150 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_151 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_152 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_153 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_154 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_155 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_156 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_157 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_158 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_159 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_15 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_160 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_161 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_162 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_163 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_164 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_165 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_166 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_167 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_168 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_169 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_16 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_170 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_171 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_172 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_173 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_174 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_175 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_176 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_177 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_178 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_179 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_17 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_180 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_181 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_182 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_183 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_184 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_185 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_186 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_187 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_188 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_189 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_18 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_190 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_191 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_192 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_193 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_194 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_195 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_196 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_197 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_198 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_199 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_19 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_1 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_200 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_201 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_202 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_203 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_204 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_205 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_206 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_20 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_210 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_211 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_212 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_213 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_214 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_215 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_216 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_217 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_218 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_219 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_21 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_220 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_221 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_222 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_223 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_224 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_225 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_226 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_227 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_228 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_229 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_22 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_230 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_231 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_232 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_233 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_234 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_235 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_236 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_237 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_238 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_239 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_23 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_240 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_241 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_242 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_243 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_244 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_245 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_246 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_247 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_248 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_249 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_24 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_250 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_251 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_252 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_253 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_254 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_255 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_25 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_26 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_27 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_28 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_29 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_2 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_30 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_31 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_32 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_33 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_34 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_35 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_36 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_37 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_38 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_39 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_3 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_40 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_41 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_42 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_43 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_44 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_45 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_46 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_47 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_48 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_49 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_4 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_50 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_51 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_52 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_53 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_54 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_55 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_56 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_57 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_58 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_59 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_5 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_60 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_61 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_62 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_66 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_67 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_68 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_69 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_6 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_70 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_74 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_75 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_76 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_77 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_78 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_79 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_7 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_80 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_81 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_82 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_83 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_84 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_85 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_86 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_87 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_88 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_89 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_8 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_90 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_91 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_92 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_93 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_94 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_95 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_96 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_97 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_98 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_99 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1050_27082018_FAK14901_H9mRNA/batch_9 -s 20180827_1050_27082018_FAK14901_H9mRNA/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_0 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_10 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_11 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_12 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_13 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_14 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_15 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_16 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_17 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_18 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_19 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_1 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_20 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_21 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_22 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_23 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_24 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_25 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_26 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_27 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_28 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_29 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_2 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_30 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_31 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_32 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_33 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_34 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_35 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_36 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_37 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_38 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_39 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_3 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_40 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_41 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_42 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_43 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_44 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_45 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_46 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_47 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_48 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_49 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_4 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_50 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_51 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_52 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_53 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_54 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_55 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_56 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_57 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_58 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_59 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_5 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_60 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_61 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_62 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_63 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_64 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_65 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_66 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_67 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_68 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_69 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_6 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_70 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_71 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_72 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_73 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_74 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_75 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_76 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_77 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_78 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_79 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_7 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_80 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_81 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_82 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_83 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_8 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_9 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.0/batch_0_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_0 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_10 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_11 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_12 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_13 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_14 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_15 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_16 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_17 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_18 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_19 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_1 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_20 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_21 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_22 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_23 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_24 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_25 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_26 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_27 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_28 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_29 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_2 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_30 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_31 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_32 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_33 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_34 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_35 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_36 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_37 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_38 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_39 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_3 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_40 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_41 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_42 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_43 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_44 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_45 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_46 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_47 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_48 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_49 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_4 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_50 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_51 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_52 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_53 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_54 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_55 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_56 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_57 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_58 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_59 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_5 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_60 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_61 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_62 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_63 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_64 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_65 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_66 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_67 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_68 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_69 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_6 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_70 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_71 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_72 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_73 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_74 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_75 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_76 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_77 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_78 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_79 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_7 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_80 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_81 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_8 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_9 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.1/batch_1_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_0 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_10 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_11 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_12 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_13 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_14 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_15 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_16 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_17 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_18 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_19 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_1 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_20 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_21 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_22 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_23 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_24 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_25 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_26 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_27 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_28 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_29 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_2 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_30 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_31 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_32 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_33 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_34 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_35 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_36 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_37 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_38 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_39 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_3 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_40 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_41 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_42 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_43 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_44 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_45 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_46 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_47 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_48 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_49 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_4 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_50 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_51 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_52 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_53 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_54 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_55 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_56 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_57 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_58 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_59 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_5 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_60 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_61 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_62 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_63 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_64 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_65 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_66 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_67 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_68 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_69 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_6 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_70 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_71 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_72 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_73 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_74 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_75 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_76 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_77 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_78 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_79 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_7 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_80 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_8 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_9 -s 20180827_1129_27082018_FAH93704_H9mRNA_RevDFlowCell.2/batch_2_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_0 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_100 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_101 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_102 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_103 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_104 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_105 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_106 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_107 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_108 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_109 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_10 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_110 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_111 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_112 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_113 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_114 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_115 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_116 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_117 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_118 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_119 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_11 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_120 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_121 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_122 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_123 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_124 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_125 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_126 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_127 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_128 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_129 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_12 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_130 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_131 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_132 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_133 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_134 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_135 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_136 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_137 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_138 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_139 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_13 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_140 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_141 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_142 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_143 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_144 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_145 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_146 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_147 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_148 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_149 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_14 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_150 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_151 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_152 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_153 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_154 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_155 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_156 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_157 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_158 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_159 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_15 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_160 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_161 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_162 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_163 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_164 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_165 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_166 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_167 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_168 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_169 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_16 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_170 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_171 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_172 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_173 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_174 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_175 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_176 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_177 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_178 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_179 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_17 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_180 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_181 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_182 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_183 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_184 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_185 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_186 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_187 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_188 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_189 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_18 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_190 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_191 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_19 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_1 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_20 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_21 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_22 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_23 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_24 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_25 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_26 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_27 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_28 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_29 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_2 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_30 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_31 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_32 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_33 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_34 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_35 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_36 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_37 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_38 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_39 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_3 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_40 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_41 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_42 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_43 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_44 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_45 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_46 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_47 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_48 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_49 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_4 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_50 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_51 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_52 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_53 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_54 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_55 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_56 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_57 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_58 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_59 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_5 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_60 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_61 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_62 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_63 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_64 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_65 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_66 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_67 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_68 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_69 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_6 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_70 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_71 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_72 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_73 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_74 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_75 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_76 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_77 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_78 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_79 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_7 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_80 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_81 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_82 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_83 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_84 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_85 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_86 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_87 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_88 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_89 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_8 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_90 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_91 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_92 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_93 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_94 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_95 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_96 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_97 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_98 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_99 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180830_1051_30082018_FAK14702_H9mRNA/batch_9 -s 20180830_1051_30082018_FAK14702_H9mRNA/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_0 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_100 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_101 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_102 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_103 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_104 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_105 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_106 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_107 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_108 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_109 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_10 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_110 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_111 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_112 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_113 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_114 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_115 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_116 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_117 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_118 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_119 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_11 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_120 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_121 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_122 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_123 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_124 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_125 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_126 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_127 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_128 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_129 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_12 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_130 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_131 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_132 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_133 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_134 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_135 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_136 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_137 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_138 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_139 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_13 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_140 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_141 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_142 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_143 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_144 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_145 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_146 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_147 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_148 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_149 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_14 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_150 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_151 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_152 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_153 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_154 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_155 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_156 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_157 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_158 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_159 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_15 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_160 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_161 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_162 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_163 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_164 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_165 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_166 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_167 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_168 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_169 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_16 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_170 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_171 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_172 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_173 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_17 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_18 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_19 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_1 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_20 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_21 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_22 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_23 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_24 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_25 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_26 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_27 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_28 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_29 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_2 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_30 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_31 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_32 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_33 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_34 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_35 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_36 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_37 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_38 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_39 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_3 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_40 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_41 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_42 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_43 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_44 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_45 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_46 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_47 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_48 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_49 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_4 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_50 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_51 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_52 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_53 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_54 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_55 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_56 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_57 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_58 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_59 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_5 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_60 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_61 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_62 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_63 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_64 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_65 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_66 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_67 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_68 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_69 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_6 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_70 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_71 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_72 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_73 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_74 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_75 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_76 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_77 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_78 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_79 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_7 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_80 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_81 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_82 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_83 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_84 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_85 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_86 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_87 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_88 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_89 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_8 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_90 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_91 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_92 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_93 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_94 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_95 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_96 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_97 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_98 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_99 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_9 -s 20190208_0727_08022019_FAK45693_H9mRNA_unmod_BR2/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_0 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_100 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_101 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_102 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_103 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_104 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_105 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_106 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_107 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_108 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_109 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_10 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_110 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_111 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_112 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_113 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_114 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_115 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_116 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_117 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_118 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_119 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_11 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_120 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_121 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_122 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_123 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_124 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_125 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_126 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_127 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_128 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_129 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_12 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_130 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_131 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_132 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_133 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_134 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_135 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_136 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_137 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_138 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_139 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_13 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_140 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_141 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_142 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_143 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_14 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_15 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_16 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_17 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_18 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_19 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_1 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_20 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_21 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_22 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_23 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_24 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_25 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_26 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_27 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_28 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_29 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_2 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_30 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_31 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_32 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_33 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_34 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_35 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_36 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_37 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_38 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_39 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_3 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_40 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_41 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_42 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_43 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_44 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_45 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_46 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_47 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_48 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_49 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_4 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_50 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_51 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_52 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_53 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_54 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_55 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_56 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_57 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_58 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_59 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_5 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_60 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_61 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_62 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_63 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_64 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_65 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_66 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_67 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_68 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_69 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_6 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_70 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_71 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_72 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_73 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_74 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_75 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_76 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_77 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_78 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_79 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_7 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_80 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_81 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_82 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_83 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_84 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_85 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_86 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_87 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_88 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_89 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_8 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_90 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_91 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_92 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_93 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_94 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_95 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_96 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_97 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_98 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_99 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_9 -s 20190211_0802_11022019_FAK46537_H9mRNA_unmod_BR2/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_0 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_10 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_11 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_12 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_13 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_14 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_15 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_16 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_17 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_18 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_19 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_1 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_20 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_21 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_22 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_23 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_24 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_25 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_26 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_27 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_28 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_29 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_2 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_30 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_31 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_32 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_33 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_34 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_35 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_36 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_37 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_38 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_39 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_3 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_4 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_5 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_6 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_7 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_8 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_9 -s 20190211_0804_11092019_FAK48878_H9mRNA_unmod_BR2/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_0 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_100 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_101 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_102 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_103 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_104 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_105 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_106 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_107 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_108 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_109 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_10 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_110 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_111 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_112 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_113 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_114 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_115 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_116 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_117 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_118 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_119 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_11 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_120 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_121 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_122 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_123 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_124 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_125 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_126 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_127 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_128 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_129 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_12 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_130 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_131 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_132 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_133 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_134 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_135 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_136 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_137 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_138 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_139 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_13 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_140 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_141 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_142 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_143 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_144 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_145 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_146 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_147 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_148 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_149 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_14 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_150 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_151 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_152 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_153 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_154 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_155 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_156 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_157 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_158 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_159 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_15 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_160 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_161 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_162 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_163 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_164 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_165 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_166 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_167 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_168 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_169 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_16 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_170 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_171 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_172 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_173 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_174 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_175 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_176 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_177 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_178 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_179 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_17 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_180 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_181 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_182 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_183 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_184 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_185 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_186 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_187 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_188 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_189 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_18 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_190 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_191 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_192 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_193 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_194 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_195 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_196 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_197 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_198 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_199 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_19 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_1 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_200 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_201 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_202 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_203 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_204 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_205 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_206 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_207 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_208 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_209 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_20 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_210 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_211 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_212 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_213 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_214 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_215 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_216 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_217 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_218 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_219 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_21 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_220 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_221 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_222 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_22 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_23 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_24 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_25 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_26 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_27 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_28 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_29 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_2 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_30 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_31 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_32 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_33 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_34 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_35 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_36 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_37 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_38 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_39 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_3 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_40 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_41 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_42 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_43 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_44 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_45 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_46 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_47 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_48 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_49 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_4 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_50 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_51 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_52 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_53 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_54 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_55 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_56 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_57 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_58 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_59 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_5 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_60 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_61 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_62 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_63 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_64 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_65 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_66 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_67 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_68 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_69 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_6 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_70 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_71 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_72 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_73 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_74 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_75 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_76 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_77 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_78 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_79 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_7 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_80 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_81 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_82 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_83 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_84 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_85 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_86 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_87 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_88 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_89 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_8 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_90 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_91 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_92 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_93 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_94 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_95 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_96 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_97 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_98 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_99 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_9 -s 20190213_0509_13022019_FAK41492_H9mRNA_unmod_BR2/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_0 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_10 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_11 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_12 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_13 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_14 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_15 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_16 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_17 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_18 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_19 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_1 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_20 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_21 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_22 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_23 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_24 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_25 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_26 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_27 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_28 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_29 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_2 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_30 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_31 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_32 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_33 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_34 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_35 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_36 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_37 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_38 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_39 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_3 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_40 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_41 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_42 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_43 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_44 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_45 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_46 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_47 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_48 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_49 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_4 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_50 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_51 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_52 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_53 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_54 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_55 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_56 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_57 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_58 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_59 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_5 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_60 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_61 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_62 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_63 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_64 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_65 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_66 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_6 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_7 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_8 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_9 -s 20190213_0517_13022019_FAK43432_H9mRNA_unmod_BR2/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_0 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_100 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_101 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_102 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_103 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_104 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_105 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_106 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_107 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_108 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_109 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_10 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_110 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_111 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_112 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_113 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_114 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_115 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_116 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_117 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_118 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_119 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_11 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_120 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_121 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_122 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_123 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_124 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_125 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_126 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_127 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_128 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_129 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_12 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_130 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_131 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_132 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_133 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_134 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_135 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_136 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_137 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_138 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_139 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_13 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_140 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_141 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_142 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_143 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_144 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_145 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_146 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_147 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_148 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_149 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_14 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_150 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_151 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_152 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_153 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_15 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_16 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_17 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_18 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_19 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_1 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_20 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_21 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_22 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_23 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_24 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_25 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_26 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_27 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_28 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_29 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_2 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_30 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_31 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_32 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_33 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_34 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_35 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_36 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_37 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_38 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_39 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_3 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_40 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_41 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_42 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_43 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_44 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_45 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_46 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_47 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_48 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_49 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_4 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_50 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_51 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_52 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_53 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_54 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_55 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_56 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_57 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_58 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_59 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_5 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_60 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_61 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_62 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_63 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_64 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_65 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_66 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_67 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_68 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_69 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_6 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_70 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_71 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_72 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_73 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_74 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_75 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_76 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_77 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_78 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_79 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_7 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_80 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_81 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_82 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_83 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_84 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_85 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_86 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_87 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_88 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_89 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_8 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_90 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_91 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_92 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_93 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_94 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_95 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_96 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_97 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_98 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_99 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_9 -s 20190215_1130_15022019_FAK41949_H9mRNA_unmod_BR2/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_0 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_10 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_11 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_12 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_13 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_14 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_15 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_16 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_17 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_18 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_19 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_1 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_20 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_21 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_22 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_23 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_24 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_25 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_26 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_27 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_28 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_29 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_2 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_30 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_31 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_32 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_33 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_34 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_35 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_36 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_37 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_38 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_39 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_3 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_40 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_41 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_42 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_43 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_44 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_45 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_46 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_47 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_48 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_49 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_4 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_50 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_51 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_52 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_53 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_54 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_55 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_56 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_57 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_58 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_59 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_5 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_60 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_61 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_62 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_63 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_64 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_65 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_66 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_67 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_6 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_7 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_8 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_9 -s 20190215_1214_15022019_FAK41933_H9mRNA_unmod_BR2/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_0 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_100 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_101 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_102 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_103 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_104 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_105 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_106 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_107 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_108 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_109 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_10 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_110 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_111 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_112 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_113 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_114 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_115 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_116 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_117 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_118 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_119 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_11 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_120 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_121 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_122 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_123 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_12 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_13 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_14 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_15 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_16 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_17 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_18 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_19 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_1 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_20 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_21 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_22 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_23 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_24 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_25 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_26 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_27 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_28 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_29 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_2 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_30 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_31 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_38 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_39 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_3 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_40 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_41 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_42 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_43 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_44 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_45 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_46 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_47 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_48 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_49 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_4 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_50 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_51 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_52 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_53 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_54 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_55 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_56 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_57 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_58 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_59 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_5 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_60 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_61 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_62 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_63 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_64 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 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/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_87 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_88 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_89 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_8 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_90 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_91 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_92 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_93 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_94 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_95 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_96 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_97 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_98 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_99 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_9 -s 20180122_0753_01222018_FAH15784_H9mRNAcontrol/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__0 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__100 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__101 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__102 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__103 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__104 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__105 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__106 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__107 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__108 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__109 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__10 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__110 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__111 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__112 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__113 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__114 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__115 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__116 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__117 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__118 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__119 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__11 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__120 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__121 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__122 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__123 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__124 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__125 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__126 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__127 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__128 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__129 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__12 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__130 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__131 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__132 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__133 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__134 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__135 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__136 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__137 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__138 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__139 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__13 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__140 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__141 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__142 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__143 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__144 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__145 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__146 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__147 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__148 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__149 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__14 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__150 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__151 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__152 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__153 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__154 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__155 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__156 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__157 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__158 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__159 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__15 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__160 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__161 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__162 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__163 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__164 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__165 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__166 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__167 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__168 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__169 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__16 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__170 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__171 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__172 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__173 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__174 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__175 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__176 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__177 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__178 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__179 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__17 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__180 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__181 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__182 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__183 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__184 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__185 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__186 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__187 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__188 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__189 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__18 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__190 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__191 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__192 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__193 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__194 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__195 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__196 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__197 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__198 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__199 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__19 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__1 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__200 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__201 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__202 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__203 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__204 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__205 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__206 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__207 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__208 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__209 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__20 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__210 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__211 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__212 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__213 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__214 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__215 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__216 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__217 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__218 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__219 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__21 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__220 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__221 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__222 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__223 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__224 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__225 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__226 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__227 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__228 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__229 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__22 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__230 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__231 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__232 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__233 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__234 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__235 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__236 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__237 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__238 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__239 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__23 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__240 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__241 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__242 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__243 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__244 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__245 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__246 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__247 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__248 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__249 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__24 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__250 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__251 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__252 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__253 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__254 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__255 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__256 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__257 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__258 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__259 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__25 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__260 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__261 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__262 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__263 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__264 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__26 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__27 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__28 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__29 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__2 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__30 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__31 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__32 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__33 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__34 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__35 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__36 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__37 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__38 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__39 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__3 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__40 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__41 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__42 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__43 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__44 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__45 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__46 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__47 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__48 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__49 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__4 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__50 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__51 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__52 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__53 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__54 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__55 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__56 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__57 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__58 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__59 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__5 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__60 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__61 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__62 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__63 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__64 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__65 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__66 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__67 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__68 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__69 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__6 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__70 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__71 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__72 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__73 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__74 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__75 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__76 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__77 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__78 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__79 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__7 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__80 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__81 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__82 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__83 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__84 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__85 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__86 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__87 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__88 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__89 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__8 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__90 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__91 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__92 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__93 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__94 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__95 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__96 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__97 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__98 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__99 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__9 -s 20180919_H9_L41_noRT/20180919_H9_ADAR1KO_L41__9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_0 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_100 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_101 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_102 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_103 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_104 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_105 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_106 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_107 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_108 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_109 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_10 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_110 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_111 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_112 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_113 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_114 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_115 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_116 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_117 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_118 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_119 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_11 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_120 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_121 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_122 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_123 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_124 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_125 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_126 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_127 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_128 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_129 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_12 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_130 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_131 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_132 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_133 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_134 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_135 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_136 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_137 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_138 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_139 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_13 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_140 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_141 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_142 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_143 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_144 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_145 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_14 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_15 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_16 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_17 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_18 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_19 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_1 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_20 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_21 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_22 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_23 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_24 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_25 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_26 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_27 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_28 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_29 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_2 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_30 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_31 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_32 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_33 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_34 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_35 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_36 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_37 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_38 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_39 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_3 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_40 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_41 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_42 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_43 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_44 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_45 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_46 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_47 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_48 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_49 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_4 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_50 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_51 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_52 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_53 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_54 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_55 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_56 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_57 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_58 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_59 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_5 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_60 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_61 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_62 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_63 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_64 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_65 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_66 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_67 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_68 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_69 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_6 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_70 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_71 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_72 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_73 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_74 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_75 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_76 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_77 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_78 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_79 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_7 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_80 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_81 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_82 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_83 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_84 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_85 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_86 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_87 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_88 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_89 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_8 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_90 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_91 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_92 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_93 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_94 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_95 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_96 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_97 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_98 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_99 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_9 -s 20190213_0946_13022019_FAK43432_H9mRNA_unmod_BR2/batch_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_0 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_10 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_11 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_12 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_13 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_14 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_15 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_16 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_17 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_18 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_19 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_1 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_20 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_21 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_22 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_23 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_24 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_25 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_26 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_27 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_28 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_29 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_2 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_30 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_31 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_32 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_33 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_34 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_35 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_36 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_37 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_38 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_3 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_4 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_5 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_6 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_7 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_8 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_9 -s 20190715_H9_L41_polyA_noRT/FAK65299_f90e15318d96dd457e99d4b6cba1a5e4454d088c_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_0 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_100 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_101 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_102 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_103 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_104 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_105 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_106 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_107 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_108 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_109 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_10 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_110 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_111 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_112 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_113 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_114 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_115 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_116 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_117 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_118 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_119 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_11 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_120 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_121 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_122 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_123 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_124 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_125 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_126 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_127 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_128 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_129 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_12 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_130 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_131 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_132 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_133 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_134 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_135 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_136 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_137 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_138 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_139 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_13 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_140 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_141 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_142 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_143 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_144 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_145 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_146 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_147 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_148 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_149 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_14 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_150 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_151 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_152 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_153 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_154 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_155 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_156 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_157 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_158 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_159 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_15 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_160 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_161 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_162 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_163 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_164 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_165 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_166 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_167 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_168 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_169 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_16 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_170 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_171 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_172 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_173 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_174 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_175 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_176 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_177 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_178 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_179 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_17 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_180 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_181 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_182 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_183 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_184 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_18 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_19 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_1 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_20 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_21 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_22 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_23 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_24 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_25 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_26 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_27 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_28 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_29 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_2 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_30 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_31 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_32 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_33 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_34 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_35 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_36 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_37 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_38 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_39 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_3 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_40 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_41 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_42 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_43 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_44 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_45 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_46 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_47 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_48 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_49 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_4 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_50 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_51 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_52 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_53 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_54 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_55 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_56 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_57 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_58 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_59 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_5 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_60 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_61 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_62 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_63 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_64 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_65 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_66 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_67 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_68 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_69 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_6 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_70 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_71 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_72 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_73 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_74 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_75 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_76 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_77 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_78 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_79 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_7 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_80 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_81 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_82 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_83 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_84 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_85 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_86 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_87 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_88 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_89 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_8 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_90 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_91 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_92 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_93 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_94 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_95 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_96 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_97 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_98 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_99 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_9 -s 20200214_H9_L41_withRT/FAL80156_1cdc3892734f801effed93f3b29faa9428eeaba5_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200214_H9_L41_withRT/FAL80156_ea26874cd3d848eb14e9560e8e5d5b79d32d4ed2_0 -s 20200214_H9_L41_withRT/FAL80156_ea26874cd3d848eb14e9560e8e5d5b79d32d4ed2_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_0 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_100 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_101 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_102 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_103 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_104 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_105 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_106 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_107 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_108 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_109 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_10 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_110 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_111 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_112 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_113 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_114 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_115 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_116 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_117 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_118 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_119 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_11 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_120 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_121 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_122 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_123 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_124 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_125 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_126 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_127 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_128 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_129 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_12 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_130 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_131 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_132 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_133 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_134 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_135 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_136 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_137 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_138 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_139 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_13 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_140 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_141 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_142 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_143 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_144 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_145 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_146 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_147 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_148 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_149 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_14 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_150 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_151 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_152 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_153 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_154 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_155 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_15 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_16 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_17 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_18 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_19 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_1 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_20 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_21 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_22 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_23 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_24 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_25 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_26 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_27 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_28 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_29 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_2 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_30 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_31 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_32 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_33 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_34 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_35 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_36 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_37 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_38 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_39 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_3 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_40 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_41 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_42 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_43 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_44 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_45 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_46 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_47 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_48 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_49 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_4 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_50 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_51 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_52 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_53 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_54 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_55 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_56 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_57 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_58 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_59 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_5 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_60 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_61 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_62 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_63 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_64 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_65 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_66 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_67 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_68 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_69 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_6 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_70 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_71 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_72 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_73 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_74 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_75 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_76 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_77 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_78 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_79 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_7 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_80 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_81 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_82 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_83 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_84 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_85 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_86 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_87 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_88 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_89 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_8 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_90 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_91 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_92 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_93 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_94 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_95 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_96 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_97 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_98 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_99 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_9 -s 20200719_xenopus_rep1_stage1_withRT/FAL90894_a1fe9ad3e428849f182342f35c15cc9df80ff070_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_0 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_10 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_11 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_12 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_13 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_14 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_15 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_16 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_17 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_18 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_19 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_1 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_20 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_21 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_22 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_23 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_24 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_25 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_26 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_27 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_28 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_29 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_2 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_30 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_31 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_32 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_33 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_34 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_35 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_36 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_37 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_38 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_39 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_3 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_40 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_41 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_42 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_43 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_44 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_45 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_46 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_47 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_48 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_49 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_4 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_50 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_51 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_52 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_53 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_54 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_55 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_56 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_57 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_58 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_59 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_5 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_60 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_61 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_62 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_63 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_6 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_7 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_8 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_9 -s 20200719_xenopus_rep2_stage1_withRT/FAL90918_b75b4e9a1d6591865c355e3b9b3a221ca18bc12d_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_0 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_100 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_101 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_102 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_103 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_104 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_105 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_106 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_107 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_108 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_109 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_10 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_110 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_111 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_112 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_113 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_114 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_115 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_116 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_117 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_118 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_119 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_11 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_120 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_121 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_122 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_123 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_124 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_125 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_126 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_127 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_128 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_129 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_12 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_130 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_131 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_132 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_133 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_134 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_135 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_136 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_137 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_138 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_139 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_13 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_140 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_141 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_142 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_143 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_144 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_145 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_146 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_147 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_148 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_149 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_14 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_150 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_151 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_152 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_153 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_154 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_155 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_156 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_157 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_158 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_159 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_15 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_160 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_161 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_162 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_163 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_164 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_165 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_166 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_167 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_168 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_169 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_16 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_170 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_171 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_172 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_173 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_174 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_175 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_176 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_177 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_178 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_179 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_17 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_180 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_181 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_182 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_183 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_184 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_185 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_186 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_187 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_188 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_189 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_18 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_190 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_191 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_192 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_193 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_194 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_195 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_196 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_197 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_198 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_199 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_19 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_1 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_200 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_201 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_202 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_203 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_204 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_205 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_206 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_207 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_208 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_209 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_20 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_210 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_211 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_212 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_213 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_214 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_215 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_216 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_217 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_218 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_219 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_21 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_220 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_221 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_222 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_223 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_224 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_225 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_226 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_227 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_228 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_229 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_22 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_230 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_231 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_232 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_233 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_234 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_235 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_236 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_237 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_238 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_239 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_23 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_240 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_241 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_242 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_243 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_244 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_245 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_246 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_247 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_248 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_249 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_24 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_250 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_251 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_252 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_253 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_254 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_255 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_256 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_257 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_258 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_259 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_25 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_260 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_261 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_262 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_263 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_264 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_265 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_266 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_267 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_268 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_269 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_26 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_270 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_271 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_272 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_273 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_274 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_275 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_276 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_277 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_278 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_279 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_27 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_280 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_281 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_282 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_283 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_284 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_285 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_286 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_287 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_288 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_289 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_28 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_290 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_291 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_292 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_293 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_294 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_295 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_296 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_297 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_298 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_299 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_29 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_2 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_300 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_301 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_302 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_303 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_304 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_305 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_306 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_307 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_308 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_309 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_30 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_310 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_311 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_312 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_313 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_314 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_315 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_316 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_317 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_318 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_319 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_31 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_320 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_321 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_322 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_323 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_324 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_325 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_32 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_33 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_34 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_35 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_36 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_37 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_38 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_39 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_3 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_40 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_41 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_42 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_43 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_44 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_45 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_46 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_47 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_48 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_49 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_4 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_50 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_51 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_52 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_53 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_54 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_55 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_56 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_57 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_58 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_59 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_5 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_60 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_61 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_62 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_63 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_64 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_65 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_66 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_67 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_68 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_69 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_6 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_70 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_71 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_72 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_73 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_74 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_75 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_76 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_77 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_78 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_79 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_7 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_80 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_81 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_82 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_83 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_84 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_85 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_86 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_87 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_88 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_89 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_8 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_90 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_91 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_92 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_93 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_94 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_95 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_96 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_97 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_98 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_99 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_9 -s 20200721_xenopus_rep1_stage9_withRT/FAL81228_fb9da95f8cde4fa21a83c87828bf9816f3cf52e5_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_0 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_100 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_101 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_102 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_103 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_104 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_105 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_106 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_107 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_108 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_109 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_10 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_110 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_111 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_112 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_113 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_114 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_115 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_116 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_117 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_118 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_119 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_11 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_120 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_121 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_122 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_123 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_124 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_125 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_126 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_127 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_128 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_129 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_12 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_130 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_131 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_132 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_133 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_134 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_135 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_136 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_137 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_138 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_139 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_13 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_140 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_141 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_142 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_143 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_144 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_145 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_146 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_147 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_148 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_149 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_14 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_150 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_151 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_152 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_153 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_154 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_155 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_156 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_157 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_158 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_159 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_15 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_160 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_161 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_162 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_163 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_164 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_165 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_166 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_167 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_168 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_169 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_16 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_170 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_171 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_172 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_173 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_174 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_175 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_176 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_177 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_178 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_179 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_17 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_180 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_181 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_182 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_183 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_184 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_185 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_186 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_187 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_188 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_189 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_18 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_190 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_191 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_192 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_193 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_194 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_195 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_196 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_197 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_198 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_199 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_19 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_1 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_200 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_201 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_202 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_203 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_204 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_205 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_206 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_207 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_208 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_209 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_20 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_210 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_211 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_212 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_213 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_214 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_215 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_216 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_217 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_218 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_219 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_21 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_220 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_221 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_222 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_223 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_224 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_225 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_226 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_227 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_228 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_229 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_22 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_230 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_231 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_232 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_233 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_234 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_235 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_236 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_237 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_238 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_239 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_23 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_240 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_241 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_242 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_243 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_244 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_245 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_246 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_247 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_248 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_249 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_24 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_250 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_251 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_252 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_253 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_254 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_255 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_256 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_257 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_258 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_259 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_25 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_260 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_261 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_262 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_263 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_264 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_265 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_266 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_267 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_268 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_269 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_26 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_270 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_271 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_272 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_273 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_274 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_275 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_276 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_277 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_278 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_279 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_27 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_280 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_281 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_282 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_283 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_284 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_285 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_286 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_287 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_288 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_289 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_28 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_290 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_291 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_292 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_293 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_294 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_295 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_296 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_297 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_298 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_299 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_29 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_2 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_300 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_301 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_302 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_303 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_304 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_305 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_306 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_307 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_308 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_309 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_30 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_310 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_311 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_312 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_313 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_314 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_315 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_316 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_317 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_318 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_319 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_31 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_320 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_321 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_322 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_323 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_324 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_325 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_326 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_327 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_328 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_329 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_32 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_330 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_331 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_332 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_333 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_334 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_335 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_336 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_337 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_338 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_339 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_33 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_340 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_341 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_342 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_343 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_344 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_345 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_346 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_347 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_348 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_349 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_34 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_350 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_351 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_352 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_353 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_354 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_355 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_356 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_357 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_358 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_359 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_35 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_360 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_361 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_362 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_363 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_364 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_365 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_366 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_367 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_368 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_369 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_36 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_370 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_371 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_372 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_373 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_374 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_375 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_376 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_377 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_378 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_379 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_37 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_380 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_381 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_382 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_383 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_384 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_385 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_386 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_387 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_388 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_389 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_38 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_390 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_391 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_392 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_393 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_394 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_395 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_396 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_397 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_398 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_399 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_39 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_3 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_400 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_401 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_402 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_403 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_404 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_405 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_406 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_407 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_408 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_409 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_40 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_410 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_411 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_412 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_413 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_414 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_415 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_416 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_417 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_418 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_419 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_41 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_420 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_421 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_422 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_423 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_424 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_425 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_426 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_427 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_428 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_429 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_42 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_430 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_431 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_432 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_433 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_434 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_435 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_436 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_437 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_438 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_439 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_43 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_440 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_441 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_442 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_443 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_444 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_44 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_45 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_46 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_47 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_48 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_49 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_4 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_50 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_51 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_52 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_53 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_54 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_55 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_56 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_57 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_58 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_59 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_5 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_60 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_61 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_62 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_63 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_64 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_65 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_66 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_67 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_68 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_69 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_6 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_70 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_71 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_72 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_73 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_74 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_75 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_76 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_77 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_78 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_79 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_7 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_80 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_81 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_82 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_83 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_84 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_85 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_86 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_87 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_88 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_89 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_8 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_90 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_91 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_92 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_93 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_94 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_95 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_96 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_97 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_98 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_99 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_9 -s 20200721_xenopus_rep2_stage9_withRT/FAL89915_c33a621af017cb3d43d58b6cae7eebb82b7b73d6_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_0 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_10 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_11 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_12 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_13 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_14 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_15 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_16 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_17 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_18 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_19 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_1 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_20 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_21 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_22 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_23 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_24 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_25 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_26 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_27 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_28 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_29 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_2 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_30 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_31 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_32 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_33 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_34 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_35 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_36 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_37 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_38 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_39 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_3 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_40 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_41 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_42 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_43 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_44 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_45 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_46 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_47 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_48 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_49 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_4 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_50 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_51 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_5 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_6 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_7 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_8 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_9 -s 20200725_mouse_brain_675_4_withRT/FAL80879_284fc664130245c9d23280f5cad2bc14eed6a75a_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_0 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_100 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_101 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_102 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_103 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_104 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_105 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_106 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_107 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_108 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_109 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_10 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_110 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_111 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_112 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_113 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_114 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_115 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_116 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_117 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_118 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_119 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_11 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_120 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_121 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_122 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_123 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_124 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_125 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_126 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_127 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_128 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_129 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_12 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_130 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_131 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_132 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_133 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_134 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_135 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_136 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_137 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_138 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_139 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_13 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_140 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_141 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_142 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_143 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_144 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_145 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_146 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_147 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_148 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_149 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_14 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_150 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_151 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_152 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_153 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_154 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_155 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_156 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_157 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_158 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_15 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_16 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_17 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_18 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_19 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_1 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_20 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_21 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_22 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_23 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_24 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_25 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_26 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_27 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_28 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_29 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_2 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_30 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_31 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_32 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_33 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_34 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_35 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_36 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_37 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_38 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_39 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_3 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_40 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_41 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_42 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_43 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_44 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_45 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_46 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_47 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_48 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_49 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_4 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_50 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_51 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_52 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_53 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_54 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_55 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_56 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_57 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_58 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_59 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_5 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_60 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_61 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_62 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_63 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_64 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_65 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_66 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_67 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_68 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_69 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_6 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_70 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_71 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_72 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_73 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_74 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_75 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_76 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_77 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_78 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_79 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_7 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_80 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_81 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_82 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_83 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_84 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_85 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_86 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_87 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_88 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_89 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_8 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_90 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_91 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_92 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_93 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_94 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_95 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_96 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_97 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_98 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_99 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_9 -s 20200725_mouse_brain_675_4_withRT/FAL80879_36e5d386b57b5a688ee36f6e0e80d1300b29b206_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_0 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_10 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_11 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_12 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_13 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_14 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_15 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_16 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_17 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_18 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_19 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_1 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_20 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_21 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_22 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_23 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_24 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_25 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_26 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_27 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_28 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_29 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_2 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_30 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_31 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_32 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_33 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_34 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_35 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_36 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_37 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_38 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_39 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_3 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_40 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_41 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_42 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_43 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_44 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_45 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_46 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_47 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_48 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_49 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_4 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_50 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_51 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_52 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_53 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_54 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_55 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_56 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_57 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_58 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_59 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_5 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_60 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_61 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_62 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_63 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_64 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_65 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_66 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_67 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_68 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_69 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_6 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_70 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_7 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_8 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_9 -s 20200729_mouse_brain_685_4_withRT/FAN28554_36c0de0483131fcf091ed2bd7c264426397d3006_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_0 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_100 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_101 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_102 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_103 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_104 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_105 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_106 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_107 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_108 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_109 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_10 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_110 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_111 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_112 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_113 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_114 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_115 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_116 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_117 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_118 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_119 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_11 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_120 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_121 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_122 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_123 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_124 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_125 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_126 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_127 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_128 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_129 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_12 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_130 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_131 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_132 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_133 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_134 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_135 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_136 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_13 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_14 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_15 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_16 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_17 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_18 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_19 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_1 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_20 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_21 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_22 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_23 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_24 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_25 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_26 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_27 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_28 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_29 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_2 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_30 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_31 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_32 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_33 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_34 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_35 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_36 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_37 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_38 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_39 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_3 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_40 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_41 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_42 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_43 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_44 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_45 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_46 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_47 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_48 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_49 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_4 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_50 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_51 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_52 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_53 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_54 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_55 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_56 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_57 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_58 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_59 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_5 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_60 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_61 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_62 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_63 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_64 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_65 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_66 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_67 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_68 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_69 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_6 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_70 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_71 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_72 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_73 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_74 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_75 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_76 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_77 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_78 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_79 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_7 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_80 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_81 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_82 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_83 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_84 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_85 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_86 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_87 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_88 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_89 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_8 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_90 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_91 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_92 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_93 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_94 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_95 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_96 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_97 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_98 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_99 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_9 -s 20200729_mouse_brain_685_4_withRT/FAN28554_bf10c8c1049432f9aac6eed5921bc5b910fcb866_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_0 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_100 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_101 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_102 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_103 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_104 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_105 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_106 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_107 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_10 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_11 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_12 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_13 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_14 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_15 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_16 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_17 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_18 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_19 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_1 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_20 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_21 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_22 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_23 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_24 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_25 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_26 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_27 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_28 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_29 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_2 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_30 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_31 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_32 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_33 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_34 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_35 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_36 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_37 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_38 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_39 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_3 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_40 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_41 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_42 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_43 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_44 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_45 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_46 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_47 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_48 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_49 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_4 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_50 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_51 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_52 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_53 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_54 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_55 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_56 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_57 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_58 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_59 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_5 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_60 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_61 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_62 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_63 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_64 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_65 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_66 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_67 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_68 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_69 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_6 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_70 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_71 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_72 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_73 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_74 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_75 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_76 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_77 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_78 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_79 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_7 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_80 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_81 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_82 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_83 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_84 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_85 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_86 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_87 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_88 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_89 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_8 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_90 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_91 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_92 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_93 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_94 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_95 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_96 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_97 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_98 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_99 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_9 -s 20200729_mouse_brain_686_4_withRT/FAN25036_2695f2944cfd6aab9d5d71c9ca3bfb079b1b4411_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_0 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_10 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_11 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_12 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_13 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_14 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_15 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_16 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_17 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_18 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_19 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_1 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_20 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_21 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_22 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_23 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_24 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_25 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_26 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_27 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_28 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_29 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_2 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_30 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_31 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_32 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_33 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_34 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_35 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_36 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_37 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_38 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_39 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_3 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_40 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_41 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_42 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_43 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_44 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_45 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_46 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_47 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_48 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_49 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_4 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_50 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_51 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_52 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_5 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_6 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_7 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_8 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_9 -s 20200729_mouse_brain_686_4_withRT/FAN25036_c32683bb1350a330232e9bf28febee97bcabc586_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_0 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_100 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_101 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_102 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_103 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_104 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_105 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_106 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_107 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_108 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_109 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_10 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_110 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_111 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_112 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_113 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_114 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_115 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_116 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_117 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_118 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_119 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_11 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_120 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_121 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_122 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_123 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_124 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_125 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_126 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_127 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_128 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_129 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_12 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_130 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_131 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_132 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_133 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_134 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_135 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_136 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_137 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_138 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_139 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_13 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_140 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_141 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_142 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_14 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_15 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_16 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_17 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_18 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_19 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_1 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_20 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_21 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_22 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_23 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_24 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_25 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_26 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_27 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_28 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_29 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_2 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_30 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_31 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_32 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_33 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_34 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_35 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_36 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_37 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_38 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_39 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_3 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_40 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_41 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_42 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_43 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_44 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_45 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_46 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_47 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_48 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_49 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_4 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_50 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_51 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_52 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_53 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_54 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_55 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_56 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_57 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_58 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_59 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_5 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_60 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_61 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_62 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_63 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_64 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_65 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_66 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_67 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_68 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_69 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_6 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_70 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_71 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_72 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_73 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_74 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_75 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_76 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_77 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_78 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_79 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_7 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_80 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_81 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_82 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_83 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_84 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_85 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_86 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_87 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_88 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_89 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_8 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_90 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_91 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_92 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_93 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_94 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_95 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_96 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_97 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_98 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_99 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_9 -s 20200802_mouse_brain_682_4_withRT/FAN24996_dab33c05d7483d1405840c685b598e3df7d840dd_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_0 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_100 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_101 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_102 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_103 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_104 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_105 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_106 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_107 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_108 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_109 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_10 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_110 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_111 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_112 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_113 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_114 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_115 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_116 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_117 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_118 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_119 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_11 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_120 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_121 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_122 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_123 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_124 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_125 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_126 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_127 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_128 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_129 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_12 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_130 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_131 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_132 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_133 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_134 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_135 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_136 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_137 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_138 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_139 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_13 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_140 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_141 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_142 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_143 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_144 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_145 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_146 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_147 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_148 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_149 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_14 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_150 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_151 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_152 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_153 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_154 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_155 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_156 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_157 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_158 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_159 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_15 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_160 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_161 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_162 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_163 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_164 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_165 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_166 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_167 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_168 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_169 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_16 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_170 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_171 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_172 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_173 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_174 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_175 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_176 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_177 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_178 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_179 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_17 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_180 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_181 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_18 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_19 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_1 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_20 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_21 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_22 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_23 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_24 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_25 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_26 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_27 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_28 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_29 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_2 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_30 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_31 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_32 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_33 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_34 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_35 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_36 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_37 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_38 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_39 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_3 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_40 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_41 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_42 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_43 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_44 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_45 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_46 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_47 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_48 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_49 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_4 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_50 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_51 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_52 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_53 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_54 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_55 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_56 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_57 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_58 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_59 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_5 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_60 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_61 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_62 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_63 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_64 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_65 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_66 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_67 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_68 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_69 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_6 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_70 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_71 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_72 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_73 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_74 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_75 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_76 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_77 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_78 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_79 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_7 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_80 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_81 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_82 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_83 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_84 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_85 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_86 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_87 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_88 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_89 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_8 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_90 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_91 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_92 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_93 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_94 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_95 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_96 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_97 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_98 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_99 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_9 -s 20200804_mouse_brain_677_4_withRT/FAN33287_8224016851906804b27023975e7e67f55f73adea_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_0 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_100 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_101 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_102 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_103 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_104 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_105 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_106 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_107 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_108 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_109 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_10 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_110 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_111 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_112 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_113 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_114 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_115 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_116 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_117 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_118 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_119 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_11 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_120 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_121 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_122 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_123 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_124 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_125 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_126 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_127 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_128 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_129 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_12 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_130 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_131 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_132 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_133 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_134 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_135 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_136 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_137 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_138 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_139 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_13 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_140 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_141 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_142 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_143 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_144 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_145 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_146 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_147 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_148 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_149 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_14 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_150 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_151 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_152 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_153 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_154 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_155 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_156 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_157 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_158 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_159 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_15 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_160 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_161 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_162 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_163 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_164 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_165 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_166 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_167 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_168 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_169 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_16 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_170 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_171 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_172 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_173 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_174 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_175 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_176 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_177 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_178 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_179 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_17 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_180 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_181 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_182 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_183 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_184 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_185 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_186 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_187 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_188 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_189 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_18 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_190 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_191 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_19 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_1 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_20 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_21 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_22 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_23 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_24 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_25 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_26 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_27 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_28 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_29 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_2 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_30 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_31 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_32 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_33 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_34 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_35 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_36 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_37 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_38 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_39 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_3 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_40 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_41 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_42 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_43 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_44 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_45 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_46 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_47 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_48 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_49 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_4 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_50 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_51 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_52 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_53 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_54 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_55 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_56 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_57 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_58 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_59 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_5 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_60 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_61 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_62 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_63 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_64 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_65 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_66 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_67 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_68 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_69 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_6 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_70 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_71 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_72 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_73 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_74 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_75 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_76 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_77 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_78 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_79 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_7 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_80 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_81 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_82 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_83 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_84 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_85 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_86 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_87 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_88 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_89 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_8 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_90 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_91 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_92 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_93 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_94 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_95 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_96 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_97 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_98 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_99 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_9 -s 20200804_mouse_brain_677_4_withRT/FAN35302_65ad20eaaf8fc2e6c49faf5e21a90c041beb8acc_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_0 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_100 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_101 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_102 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_103 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_104 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_105 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_106 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_107 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_108 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_109 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_10 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_110 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_111 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_112 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_113 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_114 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_115 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_116 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_117 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_118 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_119 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_11 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_120 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_121 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_122 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_123 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_124 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_125 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_126 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_127 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_128 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_129 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_12 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_130 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_131 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_132 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_133 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_134 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_135 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_136 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_137 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_138 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_139 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_13 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_140 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_141 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_142 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_143 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_144 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_145 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_146 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_147 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_148 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_149 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_14 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_150 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_151 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_152 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_153 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_154 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_155 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_156 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_157 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_158 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_159 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_15 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_160 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_161 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_162 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_163 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_164 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_165 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_166 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_167 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_168 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_169 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_16 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_170 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_171 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_172 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_173 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_174 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_175 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_176 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_177 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_178 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_179 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_17 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_180 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_181 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_182 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_183 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_184 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_185 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_186 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_187 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_188 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_189 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_18 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_190 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_191 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_192 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_193 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_194 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_195 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_196 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_197 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_198 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_199 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_19 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_1 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_200 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_201 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_202 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_203 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_204 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_205 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_206 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_207 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_208 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_209 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_20 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_210 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_211 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_212 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_213 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_214 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_215 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_216 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_217 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_218 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_219 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_21 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_220 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_221 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_222 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_223 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_224 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_225 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_226 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_227 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_228 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_229 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_22 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_230 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_231 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_232 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_233 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_234 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_235 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_236 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_237 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_238 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_239 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_23 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_240 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_241 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_242 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_243 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_244 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_245 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_246 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_247 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_248 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_249 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_24 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_250 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_251 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_252 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_253 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_254 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_255 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_256 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_257 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_258 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_259 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_25 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_260 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_261 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_262 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_263 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_264 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_265 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_266 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_267 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_268 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_269 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_26 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_270 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_271 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_272 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_273 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_274 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_275 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_276 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_277 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_278 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_279 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_27 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_280 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_281 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_282 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_283 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_284 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_285 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_286 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_287 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_288 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_289 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_28 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_290 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_291 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_292 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_293 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_294 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_295 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_296 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_297 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_298 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_299 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_29 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_2 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_300 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_301 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_302 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_303 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_304 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_305 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_306 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_307 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_308 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_309 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_30 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_310 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_311 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_312 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_313 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_314 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_315 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_316 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_317 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_31 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_32 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_33 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_34 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_35 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_36 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_37 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_38 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_39 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_3 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_40 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_41 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_42 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_43 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_44 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_45 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_46 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_47 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_48 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_49 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_4 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_50 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_51 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_52 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_53 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_54 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_55 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_56 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_57 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_58 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_59 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_5 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_60 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_61 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_62 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_63 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_64 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_65 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_66 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_67 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_68 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_69 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_6 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_70 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_71 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_72 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_73 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_74 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_75 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_76 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_77 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_78 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_79 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_7 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_80 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_81 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_82 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_83 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_84 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_85 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_86 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_87 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_88 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_89 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_8 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_90 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_91 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_92 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_93 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_94 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_95 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_96 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_97 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_98 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_99 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_9 -s 20200804_mouse_brain_682_4_withRT/FAN28452_549e1d39dc33d109a7fdcc0a1b9e19e218e5deca_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_0 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_100 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_101 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_102 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_103 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_104 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_105 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_106 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_107 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_108 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_109 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_10 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_110 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_111 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_112 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_113 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_114 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_11 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_12 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_13 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_14 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_15 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_16 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_17 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_18 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_19 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_1 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_20 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_21 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_22 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_23 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_24 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_25 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_26 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_27 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_28 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_29 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_2 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_30 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_31 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_32 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_33 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_34 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_35 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_36 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_37 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_38 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_39 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_3 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_40 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_41 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_42 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_43 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_44 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_45 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_46 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_47 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_48 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_49 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_4 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_50 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_51 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_52 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_53 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_54 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_55 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_56 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_57 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_58 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_59 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_5 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_60 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_61 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_62 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_63 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_64 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_65 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_66 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_67 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_68 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_69 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_6 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_70 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_71 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_72 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_73 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_74 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_75 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_76 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_77 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_78 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_79 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_7 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_80 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_81 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_82 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_83 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_84 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_85 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_86 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_87 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_88 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_89 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_8 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_90 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_91 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_92 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_93 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_94 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_95 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_96 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_97 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_98 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_99 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_9 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f949a81daabb6d15a01d64bf99447d73c9978779_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_0 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_10 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_11 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_12 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_13 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_14 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_15 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_16 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_17 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_18 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_19 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_1 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_2 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_3 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_4 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_5 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_6 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_7 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_8 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_9 -s 20200806_mouse_brain_676_4_withRT/FAL90958_f9f6cfc264f4c50b5db92094e6d13a407dc3f652_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_0 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_100 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_101 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_102 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_103 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_104 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_105 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_106 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_107 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_108 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_109 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_10 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_110 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_111 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_112 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_113 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_114 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_115 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_116 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_117 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_118 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_119 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_11 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_120 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_121 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_12 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_13 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_14 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_15 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_16 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_17 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_18 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_19 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_1 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_20 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_21 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_22 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_23 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_24 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_25 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_26 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_27 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_28 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_29 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_2 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_30 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_31 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_32 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_33 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_34 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_35 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_36 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_37 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_38 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_39 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_3 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_40 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_41 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_42 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_43 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_44 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_45 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_46 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_47 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_48 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_49 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_4 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_50 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_51 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_52 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_53 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_54 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_55 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_56 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_57 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_58 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_59 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_5 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_60 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_61 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_62 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_63 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_64 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_65 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_66 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_67 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_68 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_69 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_6 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_70 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_71 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_72 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_73 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_74 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_75 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_76 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_77 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_78 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_79 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_7 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_80 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_81 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_82 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_83 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_84 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_85 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_86 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_87 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_88 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_89 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_8 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_90 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_91 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_92 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_93 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_94 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_95 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_96 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_97 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_98 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_99 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_9 -s 20200806_mouse_brain_676_4_withRT/FAN31358_2517529d72baffbe4bcccc73b42d7b6a4293f0c3_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_0 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_100 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_101 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_102 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_103 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_104 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_105 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_106 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_107 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_108 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_109 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_10 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_110 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_111 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_112 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_113 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_114 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_115 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_116 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_117 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_118 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_119 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_11 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_120 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_121 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_122 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_123 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_124 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_125 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_126 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_127 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_128 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_129 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_12 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_130 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_131 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_132 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_133 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_134 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_135 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_136 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_137 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_138 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_139 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_13 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_140 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_141 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_142 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_143 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_144 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_145 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_146 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_147 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_148 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_149 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_14 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_150 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_151 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_152 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_153 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_154 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_155 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_156 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_157 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_158 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_159 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_15 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_160 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_161 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_162 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_163 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_164 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_165 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_166 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_167 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_168 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_169 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_16 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_170 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_171 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_172 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_173 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_174 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_175 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_176 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_177 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_178 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_179 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_17 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_180 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_181 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_182 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_183 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_184 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_185 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_186 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_187 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_188 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_189 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_18 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_190 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_191 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_192 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_193 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_194 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_195 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_196 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_197 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_198 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_199 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_19 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_1 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_200 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_201 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_202 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_203 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_204 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_205 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_206 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_207 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_208 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_209 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_20 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_210 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_211 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_212 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_213 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_214 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_215 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_216 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_217 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_218 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_219 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_21 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_220 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_221 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_222 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_223 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_224 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_225 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_226 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_227 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_228 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_229 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_22 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_230 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_231 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_232 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_233 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_234 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_235 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_236 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_237 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_238 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_239 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_23 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_240 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_241 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_242 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_243 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_244 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_245 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_246 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_247 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_248 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_249 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_24 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_250 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_251 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_252 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_253 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_254 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_255 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_256 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_257 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_258 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_259 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_25 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_260 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_261 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_262 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_263 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_264 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_265 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_266 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_267 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_268 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_269 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_26 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_270 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_271 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_272 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_273 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_274 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_275 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_276 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_277 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_278 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_279 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_27 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_280 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_281 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_282 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_283 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_284 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_285 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_286 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_287 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_288 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_289 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_28 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_290 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_291 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_292 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_293 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_294 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_295 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_296 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_297 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_298 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_299 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_29 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_2 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_300 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_301 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_302 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_303 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_304 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_305 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_306 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_307 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_308 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_309 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_30 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_310 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_311 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_312 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_313 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_314 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_315 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_316 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_317 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_318 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_319 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_31 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_320 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_321 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_322 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_323 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_324 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_325 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_326 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_327 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_328 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_329 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_32 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_330 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_331 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_332 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_333 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_334 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_335 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_336 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_337 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_338 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_339 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_33 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_340 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_341 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_342 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_343 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_344 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_345 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_346 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_347 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_348 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_349 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_34 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_350 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_351 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_352 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_353 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_354 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_355 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_356 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_357 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_358 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_359 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_35 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_360 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_361 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_362 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_36 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_37 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_38 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_39 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_3 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_40 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_41 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_42 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_43 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_44 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_45 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_46 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_47 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_48 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_49 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_4 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_50 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_51 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_52 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_53 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_54 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_55 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_56 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_57 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_58 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_59 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_5 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_60 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_61 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_62 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_63 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_64 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_65 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_66 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_67 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_68 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_69 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_6 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_70 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_71 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_72 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_73 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_74 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_75 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_76 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_77 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_78 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_79 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_7 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_80 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_81 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_82 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_83 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_84 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_85 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_86 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_87 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_88 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_89 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_8 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_90 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_91 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_92 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_93 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_94 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_95 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_96 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_97 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_98 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_99 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_9 -s 20200812_xenopus_rep3_stage1_withRT/FAL81163_d3ed4db92dbb62deaf299bbbbf36b7bb75a9637e_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_0 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_100 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_101 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_102 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_103 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_104 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_105 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_106 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_107 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_108 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_109 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_10 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_110 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_111 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_112 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_113 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_114 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_115 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_116 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_117 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_118 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_119 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_11 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_120 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_121 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_122 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_123 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_124 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_125 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_126 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_127 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_128 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_129 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_12 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_130 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_131 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_132 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_133 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_134 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_135 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_136 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_137 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_138 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_139 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_13 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_140 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_141 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_142 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_143 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_144 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_145 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_146 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_147 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_148 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_149 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_14 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_150 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_151 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_152 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_153 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_154 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_155 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_156 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_157 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_158 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_159 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_15 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_160 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_161 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_162 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_163 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_164 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_165 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_166 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_167 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_168 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_169 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_16 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_170 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_171 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_172 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_173 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_174 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_175 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_176 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_177 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_178 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_179 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_17 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_180 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_181 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_182 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_183 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_184 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_185 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_186 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_187 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_188 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_189 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_18 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_190 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_191 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_192 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_193 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_194 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_195 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_196 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_197 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_198 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_199 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_19 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_1 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_200 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_201 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_202 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_203 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_204 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_205 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_206 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_207 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_208 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_209 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_20 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_210 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_211 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_212 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_213 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_214 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_215 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_216 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_217 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_218 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_219 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_21 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_220 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_221 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_222 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_223 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_224 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_225 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_226 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_227 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_228 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_229 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_22 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_230 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_231 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_232 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_233 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_234 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_235 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_236 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_237 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_238 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_239 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_23 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_240 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_241 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_242 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_243 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_244 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_245 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_246 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_247 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_248 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_249 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_24 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_250 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_251 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_252 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_253 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_254 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_255 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_256 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_257 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_258 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_259 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_25 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_260 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_261 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_262 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_263 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_264 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_265 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_266 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_267 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_268 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_269 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_26 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_270 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_271 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_272 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_273 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_274 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_275 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_276 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_277 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_278 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_279 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_27 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_280 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_281 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_282 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_283 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_284 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_285 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_286 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_287 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_288 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_289 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_28 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_290 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_291 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_292 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_293 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_294 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_295 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_296 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_297 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_298 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_299 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_29 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_2 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_300 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_301 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_302 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_303 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_304 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_305 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_306 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_307 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_308 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_309 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_30 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_310 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_311 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_312 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_313 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_314 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_315 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_316 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_317 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_318 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_319 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_31 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_320 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_321 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_322 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_323 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_324 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_325 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_326 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_327 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_328 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_329 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_32 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_330 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_331 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_332 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_333 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_334 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_335 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_336 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_337 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_338 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_339 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_33 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_340 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_341 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_342 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_343 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_344 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_345 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_346 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_347 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_348 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_349 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_34 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_350 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_351 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_352 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_353 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_354 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_355 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_356 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_357 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_358 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_359 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_35 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_360 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_361 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_362 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_363 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_364 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_365 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_366 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_367 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_368 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_369 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_36 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_370 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_371 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_372 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_373 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_374 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_375 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_376 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_377 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_378 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_379 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_37 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_380 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_381 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_382 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_383 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_384 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_385 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_386 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_387 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_388 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_389 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_38 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_390 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_39 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_3 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_40 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_41 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_42 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_43 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_44 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_45 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_46 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_47 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_48 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_49 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_4 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_50 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_51 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_52 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_53 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_54 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_55 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_56 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_57 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_58 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_59 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_5 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_60 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_61 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_62 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_63 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_64 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_65 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_66 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_67 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_68 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_69 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_6 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_70 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_71 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_72 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_73 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_74 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_75 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_76 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_77 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_78 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_79 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_7 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_80 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_81 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_82 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_83 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_84 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_85 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_86 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_87 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_88 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_89 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_8 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_90 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_91 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_92 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_93 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_94 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_95 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_96 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_97 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_98 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_99 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_9 -s 20200812_xenopus_rep3_stage9_withRT/FAN31405_5f109d098394bd2fea283ccc8238fa9414e7e7b6_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_0 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_100 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_101 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_102 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_103 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_104 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_105 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_106 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_107 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_108 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_109 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_10 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_110 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_111 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_112 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_113 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_114 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_115 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_116 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_117 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_118 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_119 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_11 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_120 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_121 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_122 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_123 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_124 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_125 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_126 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_127 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_128 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_129 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_12 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_130 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_131 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_132 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_133 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_134 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_135 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_136 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_137 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_138 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_139 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_13 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_140 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_141 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_142 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_143 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_144 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_145 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_146 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_147 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_148 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_149 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_14 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_150 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_151 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_152 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_153 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_154 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_155 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_156 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_157 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_158 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_159 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_15 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_160 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_161 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_162 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_163 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_164 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_165 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_166 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_167 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_168 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_169 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_16 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_170 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_171 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_172 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_173 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_174 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_175 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_176 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_177 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_178 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_179 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_17 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_180 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_181 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_182 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_183 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_184 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_185 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_186 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_187 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_188 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_189 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_18 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_190 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_191 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_192 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_193 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_194 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_195 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_196 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_197 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_198 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_199 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_19 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_1 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_200 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_201 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_202 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_203 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_204 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_205 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_206 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_207 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_208 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_209 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_20 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_210 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_211 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_212 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_213 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_214 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_215 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_216 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_217 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_218 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_219 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_21 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_220 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_221 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_222 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_223 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_224 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_225 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_226 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_227 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_228 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_229 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_22 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_230 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_231 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_232 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_233 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_234 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_235 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_236 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_237 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_238 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_239 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_23 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_240 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_241 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_242 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_243 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_244 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_245 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_246 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_247 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_248 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_249 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_24 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_250 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_251 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_252 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_253 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_254 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_255 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_256 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_257 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_258 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_259 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_25 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_260 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_261 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_262 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_263 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_264 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_265 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_266 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_267 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_268 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_269 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_26 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_270 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_271 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_272 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_27 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_28 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_29 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_2 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_30 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_31 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_32 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_33 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_34 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_35 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_36 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_37 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_38 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_39 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_3 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_40 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_41 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_42 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_43 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_44 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_45 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_46 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_47 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_48 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_49 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_4 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_50 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_51 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_52 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_53 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_54 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_55 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_56 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_57 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_58 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_59 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_5 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_60 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_61 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_62 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_63 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_64 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_65 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_66 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_67 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_68 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_69 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_6 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_70 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_71 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_72 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_73 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_74 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_75 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_76 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_77 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_78 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_79 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_7 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_80 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_81 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_82 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_83 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_84 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_85 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_86 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_87 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_88 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_89 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_8 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_90 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_91 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_92 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_93 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_94 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_95 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_96 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_97 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_98 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_99 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_9 -s 20200814_xenopus_rep2_stage28_withRT/FAN33243_34af785a64dcbca3cb87acd05e2ce3d1ec182549_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_0 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_10 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_11 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_12 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_13 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_14 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_15 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_16 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_1 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_2 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_3 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_4 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_5 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_6 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_7 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_8 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_9 -s 20200820_H9_L41_withRT/FAN28478_550f06781f5959a0b9ce1be5285c2827eeb76231_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_0 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_10 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_11 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_12 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_13 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_14 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_15 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_16 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_17 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_1 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_2 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_3 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_4 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_5 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_6 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_7 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_8 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_9 -s 20200824_H9_L41_withRT/FAN28707_10c62b5420493f542af8ce12bcef3eee1f89a9a1_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_0 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_10 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_11 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_12 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_13 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_14 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_15 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_16 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_17 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_18 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_19 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_1 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_20 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_21 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_22 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_23 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_24 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_25 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_26 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_27 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_28 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_29 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_2 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_30 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_31 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_32 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_33 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_34 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_35 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_36 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_37 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_38 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_39 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_3 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_40 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_41 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_42 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_43 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_44 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_45 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_46 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_47 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_48 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_49 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_4 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_50 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_51 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_52 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_53 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_54 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_55 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_56 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_57 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_58 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_59 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_5 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_60 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_61 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_62 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_63 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_64 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_65 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_66 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_67 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_68 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_69 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_6 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_70 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_71 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_72 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_73 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_74 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_75 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_76 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_77 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_78 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_79 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_7 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_80 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_81 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_82 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_83 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_84 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_85 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_86 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_87 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_88 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_89 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_8 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_90 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_91 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_92 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_9 -s 20200901_H9_L41_withRT/FAN28356_12e65553f73a9f1c78ef9b9dd9893f3f4db4b2f0_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_0 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_100 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_101 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_102 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_103 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_104 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_105 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_106 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_107 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_108 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_109 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_10 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_110 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_111 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_112 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_113 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_114 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_115 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_116 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_117 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_118 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_119 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_11 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_120 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_121 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_122 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_123 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_124 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_125 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_126 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_127 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_128 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_129 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_12 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_130 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_131 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_132 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_133 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_134 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_135 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_136 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_137 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_138 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_139 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_13 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_140 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_141 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_142 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_143 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_144 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_145 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_146 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_147 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_148 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_149 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_14 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_150 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_151 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_152 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_153 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_154 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_155 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_156 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_157 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_158 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_159 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_15 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_160 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_161 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_162 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_163 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_164 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_165 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_166 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_167 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_168 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_169 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_16 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_170 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_171 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_172 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_173 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_174 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_175 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_176 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_177 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_178 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_179 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_17 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_180 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_181 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_182 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_183 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_184 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_185 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_186 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_18 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_19 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_1 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_20 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_21 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_22 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_23 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_24 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_25 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_26 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_27 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_28 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_29 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_2 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_30 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_31 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_32 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_33 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_34 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_35 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_36 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_37 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_38 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_39 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_3 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_40 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_41 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_42 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_43 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_44 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_45 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_46 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_47 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_48 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_49 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_4 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_50 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_51 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_52 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_53 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_54 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_55 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_56 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_57 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_58 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_59 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_5 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_60 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_61 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_62 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_63 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_64 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_65 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_66 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_67 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_68 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_69 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_6 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_70 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_71 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_72 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_73 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_74 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_75 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_76 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_77 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_78 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_79 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_7 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_80 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_81 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_82 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_83 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_84 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_85 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_86 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_87 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_88 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_89 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_8 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_90 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_91 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_92 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_93 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_94 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_95 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_96 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_97 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_98 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_99 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_9 -s 20200905_mouse_brain_675_4_withRT/FAN28627_93060cc56dae3393cb7980ae3761166e181b9ef7_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_0 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_100 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_101 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_102 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_103 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_104 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_105 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_106 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_107 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_108 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_109 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_10 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_110 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_111 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_112 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_113 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_114 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_115 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_116 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_117 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_118 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_119 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_11 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_120 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_121 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_122 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_123 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_124 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_125 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_126 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_127 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_128 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_129 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_12 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_130 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_131 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_132 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_133 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_134 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_135 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_136 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_137 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_138 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_139 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_13 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_140 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_141 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_142 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_143 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_144 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_145 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_146 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_147 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_148 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_149 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_14 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_150 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_151 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_152 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_153 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_154 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_155 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_156 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_157 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_158 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_159 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_15 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_160 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_161 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_162 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_163 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_164 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_165 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_166 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_167 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_168 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_169 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_16 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_170 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_171 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_172 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_173 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_174 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_175 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_176 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_177 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_178 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_179 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_17 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_180 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_181 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_182 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_183 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_184 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_185 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_186 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_187 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_188 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_189 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_18 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_190 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_191 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_192 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_193 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_194 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_195 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_196 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_197 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_198 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_199 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_19 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_1 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_200 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_201 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_202 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_203 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_204 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_205 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_206 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_207 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_208 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_209 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_20 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_210 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_211 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_212 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_213 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_214 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_215 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_216 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_217 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_218 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_219 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_21 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_220 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_221 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_222 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_223 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_224 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_225 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_226 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_227 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_228 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_229 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_22 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_230 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_231 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_232 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_233 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_234 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_235 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_236 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_237 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_238 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_239 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_23 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_240 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_241 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_242 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_243 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_244 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_245 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_246 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_247 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_248 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_249 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_24 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_250 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_251 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_252 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_253 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_254 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_255 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_256 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_257 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_258 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_259 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_25 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_260 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_261 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_262 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_263 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_264 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_265 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_266 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_267 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_268 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_269 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_26 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_270 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_271 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_272 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_273 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_274 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_275 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_276 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_277 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_278 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_279 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_27 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_280 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_281 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_282 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_283 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_284 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_285 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_286 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_287 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_288 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_289 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_28 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_290 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_291 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_292 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_293 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_294 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_295 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_296 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_297 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_298 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_299 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_29 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_2 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_300 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_301 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_302 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_303 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_304 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_305 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_306 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_307 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_308 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_309 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_30 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_310 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_311 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_312 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_313 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_314 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_315 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_316 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_317 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_318 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_319 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_31 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_320 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_321 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_322 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_323 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_324 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_325 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_326 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_327 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_328 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_329 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_32 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_330 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_331 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_332 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_333 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_334 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_335 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_336 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_337 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_338 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_339 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_33 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_340 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_341 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_342 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_343 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_344 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_345 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_346 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_347 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_348 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_349 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_34 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_350 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_351 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_352 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_353 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_354 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_355 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_356 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_357 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_358 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_359 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_35 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_360 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_361 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_362 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_363 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_364 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_365 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_366 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_367 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_368 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_369 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_36 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_37 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_38 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_39 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_3 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_40 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_41 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_42 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_43 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_44 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_45 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_46 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_47 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_48 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_49 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_4 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_50 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_51 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_52 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_53 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_54 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_55 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_56 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_57 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_58 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_59 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_5 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_60 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_61 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_62 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_63 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_64 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_65 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_66 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_67 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_68 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_69 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_6 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_70 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_71 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_72 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_73 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_74 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_75 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_76 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_77 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_78 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_79 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_7 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_80 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_81 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_82 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_83 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_84 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_85 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_86 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_87 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_88 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_89 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_8 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_90 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_91 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_92 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_93 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_94 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_95 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_96 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_97 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_98 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_99 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_9 -s 20200905_mouse_brain_676_4_withRT/FAN31453_c14a12c2de5ea8c581113906d9fd6cb7956f032c_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_0 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_100 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_101 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_102 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_103 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_104 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_105 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_106 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_107 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_108 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_109 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_10 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_110 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_111 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_112 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_113 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_114 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_115 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_116 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_117 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_118 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_119 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_11 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_120 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_121 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_122 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_123 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_124 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_125 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_126 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_127 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_128 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_129 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_12 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_130 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_131 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_132 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_133 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_134 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_135 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_136 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_137 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_138 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_139 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_13 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_140 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_141 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_142 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_143 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_144 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_145 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_146 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_147 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_148 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_149 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_14 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_150 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_151 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_152 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_153 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_154 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_155 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_156 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_157 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_158 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_159 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_15 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_160 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_161 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_162 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_163 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_164 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_165 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_166 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_167 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_168 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_169 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_16 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_170 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_171 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_172 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_173 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_174 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_175 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_176 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_177 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_178 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_179 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_17 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_180 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_181 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_182 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_183 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_184 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_185 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_186 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_187 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_188 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_189 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_18 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_190 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_191 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_192 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_193 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_194 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_195 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_196 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_197 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_198 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_199 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_19 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_1 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_200 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_201 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_202 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_203 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_204 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_205 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_206 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_207 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_208 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_209 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_20 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_210 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_211 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_212 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_213 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_214 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_215 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_216 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_217 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_218 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_219 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_21 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_220 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_221 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_222 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_223 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_224 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_225 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_226 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_227 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_228 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_229 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_22 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_230 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_231 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_232 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_233 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_234 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_235 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_236 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_237 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_238 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_239 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_23 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_240 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_241 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_242 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_243 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_244 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_245 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_246 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_247 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_248 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_249 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_24 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_250 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_251 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_252 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_253 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_254 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_255 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_256 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_257 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_258 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_259 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_25 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_260 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_261 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_262 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_263 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_264 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_265 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_266 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_267 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_268 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_269 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_26 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_270 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_271 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_272 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_273 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_274 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_275 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_276 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_277 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_278 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_279 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_27 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_280 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_281 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_282 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_283 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_284 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_285 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_286 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_287 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_288 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_289 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_28 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_290 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_291 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_292 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_293 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_294 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_295 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_296 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_297 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_298 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_299 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_29 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_2 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_300 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_301 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_302 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_303 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_304 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_305 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_306 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_307 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_308 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_309 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_30 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_310 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_311 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_312 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_313 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_314 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_315 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_316 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_317 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_318 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_319 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_31 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_320 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_321 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_322 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_323 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_324 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_325 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_326 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_327 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_328 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_329 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_32 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_330 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_331 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_332 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_333 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_334 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_335 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_336 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_337 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_338 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_339 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_33 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_340 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_341 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_342 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_343 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_344 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_345 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_34 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_35 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_36 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_37 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_38 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_39 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_3 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_40 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_41 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_42 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_43 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_44 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_45 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_46 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_47 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_48 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_49 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_4 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_50 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_51 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_52 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_53 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_54 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_55 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_56 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_57 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_58 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_59 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_5 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_60 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_61 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_62 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_63 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_64 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_65 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_66 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_67 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_68 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_69 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_6 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_70 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_71 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_72 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_73 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_74 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_75 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_76 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_77 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_78 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_79 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_7 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_80 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_81 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_82 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_83 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_84 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_85 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_86 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_87 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_88 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_89 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_8 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_90 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_91 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_92 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_93 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_94 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_95 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_96 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_97 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_98 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_99 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_9 -s 20200907_mouse_brain_685_4_withRT/FAN28348_9240eda9e0b8793475486475ca797bd7d6ec1412_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_0 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_100 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_101 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_102 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_103 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_104 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_105 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_106 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_107 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_108 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_109 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_10 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_110 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_111 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_112 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_113 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_114 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_115 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_116 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_117 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_118 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_119 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_11 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_120 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_121 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_122 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_123 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_124 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_125 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_126 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_127 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_128 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_129 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_12 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_130 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_131 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_132 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_133 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_134 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_135 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_136 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_137 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_138 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_139 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_13 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_140 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_141 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_142 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_143 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_144 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_145 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_146 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_147 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_148 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_149 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_14 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_150 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_151 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_152 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_153 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_154 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_155 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_156 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_157 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_158 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_159 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_15 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_160 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_161 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_162 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_163 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_164 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_165 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_166 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_167 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_168 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_169 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_16 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_170 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_171 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_172 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_173 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_174 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_175 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_176 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_177 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_178 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_179 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_17 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_180 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_181 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_182 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_183 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_184 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_185 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_186 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_187 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_188 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_189 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_18 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_190 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_191 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_192 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_193 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_194 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_195 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_196 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_197 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_198 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_199 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_19 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_1 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_200 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_201 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_202 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_203 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_204 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_205 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_206 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_207 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_208 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_209 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_20 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_210 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_211 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_212 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_213 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_214 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_215 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_216 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_217 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_218 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_219 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_21 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_220 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_221 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_222 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_223 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_224 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_225 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_226 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_227 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_228 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_229 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_22 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_230 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_231 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_232 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_233 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_234 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_235 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_236 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_23 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_24 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_25 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_26 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_27 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_28 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_29 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_2 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_30 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_31 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_32 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_33 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_34 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_35 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_36 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_37 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_38 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_39 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_3 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_40 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_41 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_42 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_43 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_44 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_45 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_46 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_47 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_48 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_49 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_4 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_50 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_51 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_52 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_53 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_54 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_55 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_56 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_57 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_58 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_59 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_5 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_60 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_61 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_62 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_63 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_64 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_65 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_66 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_67 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_68 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_69 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_6 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_70 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_71 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_72 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_73 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_74 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_75 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_76 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_77 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_78 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_79 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_7 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_80 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_81 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_82 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_83 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_84 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_85 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_86 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_87 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_88 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_89 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_8 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_90 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_91 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_92 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_93 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_94 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_95 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_96 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_97 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_98 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_99 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_9 -s 20200907_mouse_brain_686_4_withRT/FAN31389_7e2076f804e8c92836cf0fda45c0cbc253f346ec_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_0 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_100 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_101 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_102 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_103 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_104 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_105 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_106 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_107 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_108 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_109 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_10 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_110 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_111 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_112 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_113 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_114 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_115 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_116 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_117 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_118 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_119 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_11 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_120 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_121 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_122 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_123 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_124 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_125 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_126 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_127 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_128 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_129 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_12 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_130 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_131 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_132 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_133 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_134 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_135 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_136 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_137 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_138 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_139 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_13 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_140 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_141 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_142 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_143 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_144 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_145 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_146 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_147 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_148 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_149 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_14 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_150 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_151 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_152 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_153 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_154 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_155 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_156 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_157 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_158 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_159 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_15 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_160 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_161 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_162 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_163 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_164 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_165 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_166 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_167 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_168 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_169 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_16 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_170 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_171 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_172 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_173 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_174 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_175 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_176 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_177 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_178 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_179 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_17 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_180 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_181 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_182 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_183 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_184 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_185 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_186 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_187 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_188 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_189 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_18 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_190 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_191 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_192 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_193 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_194 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_195 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_196 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_197 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_198 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_199 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_19 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_1 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_200 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_201 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_202 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_203 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_204 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_205 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_206 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_207 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_208 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_209 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_20 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_210 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_211 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_212 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_213 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_214 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_215 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_216 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_217 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_218 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_219 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_21 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_220 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_221 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_222 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_223 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_224 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_225 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_226 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_227 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_228 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_229 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_22 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_230 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_231 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_232 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_233 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_234 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_235 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_236 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_237 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_238 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_239 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_23 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_240 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_241 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_242 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_243 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_244 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_245 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_246 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_247 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_248 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_249 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_24 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_250 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_251 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_252 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_253 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_254 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_255 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_256 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_257 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_258 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_259 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_25 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_260 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_261 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_262 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_263 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_264 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_265 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_266 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_267 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_268 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_269 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_26 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_270 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_271 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_272 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_273 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_274 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_275 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_276 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_277 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_278 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_279 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_27 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_280 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_281 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_282 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_283 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_284 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_285 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_286 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_287 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_288 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_289 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_28 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_290 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_291 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_292 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_293 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_294 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_295 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_296 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_297 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_298 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_299 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_29 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_2 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_30 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_31 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_32 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_33 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_34 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_35 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_36 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_37 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_38 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_39 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_3 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_40 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_41 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_42 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_43 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_44 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_45 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_46 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_47 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_48 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_49 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_4 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_50 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_51 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_52 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_53 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_54 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_55 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_56 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_57 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_58 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_59 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_5 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_60 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_61 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_62 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_63 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_64 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_65 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_66 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_67 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_68 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_69 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_6 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_70 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_71 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_72 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_73 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_74 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_75 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_76 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_77 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_78 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_79 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_7 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_80 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_81 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_82 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_83 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_84 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_85 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_86 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_87 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_88 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_89 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_8 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_90 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_91 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_92 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_93 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_94 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_95 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_96 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_97 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_98 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_99 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_9 -s 20200908_mouse_brain_675_4_withRT/FAN28769_b4536eee6f887f0e2ab9d802b91675b470a3702b_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_0 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_100 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_101 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_102 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_103 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_104 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_105 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_106 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_107 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_108 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_109 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_10 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_110 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_111 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_112 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_113 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_114 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_115 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_116 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_117 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_118 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_119 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_11 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_12 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_13 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_14 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_15 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_16 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_17 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_18 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_19 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_1 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_20 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_21 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_22 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_23 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_24 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_25 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_26 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_27 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_28 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_29 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_2 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_30 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_31 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_32 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_33 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_34 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_35 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_36 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_37 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_38 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_39 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_3 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_40 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_41 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_42 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_43 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_44 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_45 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_46 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_47 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_48 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_49 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_4 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_50 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_51 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_52 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_53 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_54 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_55 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_56 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_57 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_58 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_59 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_5 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_60 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_61 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_62 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_63 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_64 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_65 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_66 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_67 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_68 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_69 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_6 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_70 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_71 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_72 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_73 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_74 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_75 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_76 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_77 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_78 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_79 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_7 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_80 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_81 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_82 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_83 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_84 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_85 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_86 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_87 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_88 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_89 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_8 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_90 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_91 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_92 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_93 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_94 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_95 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_96 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_97 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_98 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_99 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_9 -s 20200908_mouse_brain_677_4_withRT/FAN23188_0d71d4c4b7fae71ea335301b3fa00c4f993102db_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_0 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_10 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_11 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_12 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_13 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_14 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_15 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_16 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_17 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_18 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_19 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_1 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_20 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_21 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_22 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_23 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_24 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_25 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_26 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_27 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_28 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_29 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_2 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_30 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_31 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_32 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_33 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_34 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_35 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_36 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_37 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_38 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_39 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_3 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_40 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_41 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_42 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_43 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_44 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_45 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_46 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_47 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_48 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_49 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_4 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_50 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_51 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_52 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_53 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_54 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_5 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_6 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_7 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_8 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_9 -s 20200909_H9_L41_withRT/FAN28346_c384ce94f369aa99fc290ee38dec474122f6019d_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_0 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_100 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_101 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_102 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_103 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_10 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_11 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_12 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_13 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_14 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_15 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_16 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_17 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_18 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_19 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_1 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_20 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_21 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_22 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_23 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_24 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_25 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_26 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_27 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_28 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_29 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_2 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_30 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_31 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_32 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_33 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_34 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_35 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_36 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_37 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_38 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_39 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_3 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_40 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_41 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_42 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_43 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_44 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_45 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_46 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_47 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_48 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_49 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_4 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_50 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_51 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_52 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_53 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_54 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_55 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_56 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_57 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_58 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_59 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_5 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_60 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_61 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_62 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_63 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_64 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_65 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_66 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_67 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_68 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_69 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_6 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_70 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_71 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_72 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_73 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_74 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_75 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_76 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_77 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_78 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_79 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_7 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_80 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_81 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_82 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_83 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_84 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_85 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_86 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_87 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_88 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_89 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_8 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_90 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_91 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_92 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_93 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_94 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_95 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_96 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_97 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_98 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_99 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_9 -s 20200909_xenopus_rep1_stage1_withRT/FAN31654_070a1a1b7a0851dcf9b91d88122dc01be35b8128_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_0 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_100 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_101 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_102 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_103 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_104 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_105 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_106 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_107 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_108 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_109 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_10 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_110 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_111 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_112 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_113 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_114 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_115 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_116 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_117 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_118 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_119 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_11 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_120 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_121 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_122 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_123 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_124 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_125 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_126 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_127 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_128 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_129 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_12 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_130 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_131 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_132 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_133 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_134 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_135 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_136 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_137 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_138 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_139 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_13 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_140 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_141 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_142 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_143 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_144 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_145 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_146 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_147 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_148 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_149 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_14 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_150 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_151 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_152 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_153 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_154 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_155 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_156 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_157 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_158 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_159 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_15 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_160 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_161 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_162 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_163 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_164 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_165 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_166 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_167 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_168 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_169 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_16 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_170 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_171 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_172 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_173 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_174 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_175 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_176 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_177 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_178 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_179 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_17 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_180 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_181 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_182 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_183 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_184 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_185 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_186 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_187 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_188 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_189 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_18 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_190 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_191 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_192 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_193 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_194 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_195 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_196 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_197 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_198 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_199 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_19 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_1 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_200 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_201 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_202 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_203 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_204 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_205 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_206 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_207 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_208 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_209 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_20 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_210 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_211 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_212 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_213 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_214 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_215 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_216 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_217 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_218 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_219 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_21 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_220 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_221 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_222 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_223 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_224 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_225 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_226 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_227 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_228 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_229 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_22 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_230 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_231 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_232 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_233 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_234 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_235 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_236 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_237 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_238 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_239 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_23 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_240 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_241 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_242 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_243 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_244 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_245 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_246 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_247 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_248 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_249 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_24 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_250 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_251 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_252 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_253 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_254 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_255 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_256 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_257 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_258 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_259 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_25 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_260 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_261 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_262 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_263 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_264 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_265 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_266 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_267 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_268 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_269 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_26 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_270 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_271 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_272 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_273 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_274 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_275 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_276 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_277 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_278 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_279 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_27 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_280 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_281 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_282 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_283 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_284 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_285 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_286 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_287 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_288 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_289 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_28 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_290 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_291 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_292 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_293 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_294 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_295 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_296 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_297 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_298 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_299 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_29 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_2 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_300 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_301 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_302 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_303 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_304 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_305 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_306 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_307 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_308 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_309 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_30 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_310 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_311 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_312 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_313 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_314 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_315 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_316 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_317 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_318 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_319 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_31 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_320 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_321 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_322 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_323 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_324 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_325 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_32 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_33 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_34 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_35 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_36 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_37 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_38 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_39 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_3 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_40 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_41 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_42 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_43 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_44 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_45 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_46 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_47 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_48 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_49 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_4 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_50 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_51 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_52 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_53 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_54 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_55 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_56 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_57 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_58 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_59 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_5 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_60 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_61 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_62 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_63 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_64 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_65 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_66 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_67 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_68 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_69 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_6 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_70 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_71 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_72 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_73 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_74 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_75 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_76 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_77 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_78 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_79 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_7 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_80 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_81 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_82 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_83 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_84 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_85 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_86 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_87 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_88 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_89 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_8 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_90 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_91 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_92 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_93 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_94 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_95 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_96 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_97 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_98 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_99 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_9 -s 20201005_xenopus_rep1_stage1_withRT/FAO69781_8fd8044f_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_0 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_100 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_101 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_102 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_103 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_104 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_105 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_106 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_107 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_108 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_109 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_10 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_110 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_111 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_112 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_113 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_114 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_115 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_116 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_117 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_118 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_119 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_11 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_120 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_121 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_122 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_123 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_124 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_125 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_126 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_127 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_128 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_129 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_12 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_130 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_131 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_132 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_133 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_134 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_135 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_136 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_137 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_138 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_139 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_13 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_140 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_141 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_142 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_143 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_144 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_145 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_146 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_147 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_148 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_149 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_14 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_150 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_151 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_152 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_153 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_154 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_155 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_156 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_157 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_158 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_159 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_15 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_160 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_161 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_162 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_163 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_164 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_165 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_166 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_167 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_168 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_169 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_16 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_170 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_171 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_172 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_173 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_174 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_175 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_176 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_177 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_178 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_179 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_17 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_180 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_181 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_182 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_183 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_184 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_185 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_186 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_187 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_188 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_189 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_18 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_190 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_191 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_192 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_193 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_194 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_195 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_196 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_197 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_198 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_199 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_19 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_1 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_200 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_201 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_202 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_203 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_204 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_205 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_206 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_207 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_208 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_209 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_20 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_210 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_211 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_212 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_213 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_214 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_215 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_216 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_217 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_218 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_219 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_21 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_220 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_221 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_222 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_223 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_224 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_225 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_226 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_227 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_228 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_229 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_22 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_230 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_231 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_232 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_233 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_234 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_235 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_236 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_237 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_238 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_239 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_23 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_240 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_241 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_242 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_243 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_244 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_245 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_246 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_247 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_248 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_249 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_24 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_250 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_251 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_252 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_253 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_254 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_255 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_256 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_257 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_258 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_259 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_25 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_260 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_261 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_262 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_263 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_264 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_265 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_266 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_267 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_268 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_269 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_26 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_270 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_271 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_272 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_273 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_274 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_275 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_276 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_277 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_278 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_279 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_27 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_280 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_281 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_282 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_283 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_284 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_285 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_286 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_287 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_288 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_289 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_28 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_290 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_291 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_292 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_293 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_294 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_295 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_296 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_297 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_298 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_299 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_29 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_2 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_300 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_301 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_302 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_303 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_304 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_305 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_306 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_307 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_308 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_309 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_30 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_310 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_311 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_312 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_313 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_314 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_315 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_316 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_317 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_318 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_319 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_31 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_320 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_321 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_322 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_323 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_324 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_325 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_326 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_327 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_328 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_329 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_32 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_330 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_331 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_332 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_333 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_334 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_335 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_336 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_337 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_338 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_339 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_33 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_340 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_341 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_342 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_343 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_344 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_345 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_346 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_347 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_348 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_349 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_34 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_350 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_351 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_352 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_353 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_354 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_355 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_356 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_357 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_358 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_359 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_35 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_360 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_361 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_362 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_363 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_364 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_365 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_366 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_367 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_368 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_369 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_36 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_370 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_371 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_372 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_373 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_374 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_375 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_376 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_377 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_378 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_379 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_37 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_380 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_381 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_382 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_383 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_384 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_385 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_386 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_387 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_388 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_389 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_38 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_390 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_391 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_392 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_393 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_394 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_395 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_396 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_39 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_3 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_40 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_41 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_42 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_43 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_44 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_45 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_46 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_47 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_48 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_49 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_4 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_50 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_51 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_52 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_53 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_54 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_55 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_56 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_57 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_58 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_59 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_5 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_60 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_61 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_62 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_63 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_64 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_65 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_66 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_67 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_68 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_69 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_6 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_70 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_71 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_72 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_73 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_74 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_75 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_76 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_77 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_78 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_79 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_7 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_80 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_81 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_82 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_83 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_84 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_85 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_86 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_87 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_88 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_89 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_8 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_90 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_91 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_92 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_93 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_94 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_95 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_96 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_97 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_98 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_99 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_9 -s 20201005_xenopus_rep1_stage9_withRT/FAO69755_4b1f0b9b_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_0 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_10 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_11 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_12 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_13 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_14 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_15 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_16 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_17 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_18 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_19 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_1 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_20 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_21 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_22 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_23 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_24 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_25 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_26 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_27 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_28 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_29 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_2 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_30 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_31 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_32 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_33 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_34 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_35 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_36 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_37 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_38 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_39 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_3 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_40 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_41 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_42 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_43 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_44 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_45 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_46 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_47 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_48 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_49 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_4 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_50 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_51 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_52 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_53 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_54 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_55 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_56 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_57 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_58 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_59 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_5 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_60 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_61 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_62 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_63 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_64 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_65 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_66 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_67 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_68 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_69 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_6 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_70 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_71 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_7 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_8 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_9 -s 20201005_xenopus_rep2_stage1_withRT/FAO69275_c80a7281_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_0 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_100 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_101 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_102 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_103 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_104 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_105 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_106 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_107 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_108 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_109 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_10 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_110 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_111 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_112 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_113 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_114 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_115 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_116 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_117 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_118 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_119 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_11 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_120 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_121 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_122 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_123 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_124 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_125 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_126 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_127 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_128 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_129 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_12 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_130 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_131 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_132 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_133 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_134 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_135 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_136 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_137 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_138 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_139 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_13 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_140 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_141 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_142 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_143 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_144 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_145 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_146 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_147 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_148 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_149 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_14 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_150 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_151 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_152 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_153 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_154 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_155 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_156 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_157 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_158 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_159 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_15 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_160 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_161 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_162 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_163 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_164 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_165 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_166 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_167 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_168 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_169 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_16 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_170 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_171 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_172 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_173 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_174 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_175 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_176 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_177 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_178 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_179 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_17 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_180 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_181 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_182 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_183 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_184 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_185 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_186 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_187 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_188 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_189 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_18 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_190 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_191 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_192 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_193 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_194 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_195 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_196 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_197 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_198 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_199 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_19 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_1 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_200 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_201 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_202 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_203 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_204 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_205 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_206 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_207 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_208 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_209 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_20 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_210 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_211 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_212 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_213 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_214 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_215 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_216 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_217 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_218 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_219 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_21 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_220 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_221 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_222 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_223 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_224 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_225 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_226 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_227 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_228 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_229 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_22 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_230 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_231 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_232 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_233 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_234 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_235 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_236 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_237 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_238 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_239 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_23 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_240 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_241 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_242 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_243 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_244 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_245 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_246 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_247 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_248 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_249 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_24 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_250 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_251 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_252 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_253 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_254 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_255 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_256 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_257 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_258 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_259 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_25 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_260 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_261 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_262 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_263 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_264 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_265 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_266 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_267 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_268 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_269 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_26 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_270 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_271 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_272 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_273 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_274 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_275 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_276 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_277 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_278 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_279 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_27 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_280 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_281 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_282 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_283 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_284 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_285 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_286 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_287 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_288 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_289 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_28 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_290 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_291 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_292 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_293 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_294 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_295 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_296 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_297 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_298 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_299 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_29 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_2 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_300 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_301 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_302 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_303 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_304 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_305 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_306 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_307 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_308 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_309 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_30 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_310 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_311 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_312 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_313 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_314 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_315 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_316 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_317 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_318 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_319 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_31 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_320 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_321 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_322 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_323 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_324 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_325 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_326 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_327 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_328 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_329 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_32 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_330 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_331 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_332 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_333 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_334 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_335 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_336 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_337 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_338 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_339 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_33 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_340 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_341 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_342 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_343 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_344 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_345 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_346 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_347 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_348 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_349 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_34 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_350 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_351 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_352 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_353 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_354 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_355 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_356 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_357 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_358 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_359 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_35 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_360 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_361 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_362 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_363 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_364 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_365 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_366 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_367 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_368 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_369 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_36 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_370 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_371 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_372 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_373 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_374 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_375 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_376 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_377 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_378 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_379 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_37 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_380 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_381 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_382 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_383 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_384 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_385 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_386 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_387 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_388 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_389 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_38 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_390 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_391 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_392 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_393 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_394 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_395 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_396 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_39 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_3 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_40 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_41 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_42 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_43 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_44 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_45 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_46 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_47 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_48 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_49 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_4 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_50 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_51 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_52 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_53 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_54 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_55 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_56 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_57 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_58 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_59 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_5 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_60 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_61 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_62 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_63 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_64 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_65 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_66 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_67 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_68 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_69 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_6 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_70 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_71 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_72 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_73 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_74 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_75 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_76 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_77 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_78 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_79 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_7 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_80 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_81 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_82 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_83 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_84 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_85 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_86 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_87 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_88 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_89 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_8 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_90 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_91 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_92 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_93 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_94 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_95 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_96 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_97 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_98 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_99 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_9 -s 20201005_xenopus_rep2_stage9_withRT/FAO69227_6428c0fe_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_0 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_100 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_101 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_102 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_103 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_104 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_105 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_106 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_107 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_108 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_109 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_10 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_110 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_111 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_112 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_113 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_114 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_115 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_116 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_117 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_118 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_119 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_11 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_120 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_121 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_122 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_123 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_124 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_125 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_126 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_127 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_128 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_129 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_12 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_130 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_131 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_132 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_133 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_134 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_135 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_136 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_137 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_138 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_139 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_13 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_140 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_141 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_142 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_143 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_144 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_145 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_146 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_147 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_148 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_149 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_14 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_150 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_151 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_152 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_153 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_154 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_155 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_156 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_157 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_158 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_159 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_15 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_160 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_161 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_162 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_163 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_164 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_165 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_166 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_167 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_168 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_169 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_16 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_170 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_171 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_172 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_173 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_174 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_175 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_176 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_177 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_178 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_179 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_17 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_180 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_181 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_182 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_183 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_184 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_185 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_186 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_187 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_188 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_189 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_18 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_190 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_191 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_192 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_193 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_194 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_195 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_196 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_197 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_198 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_199 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_19 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_1 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_200 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_201 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_202 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_203 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_204 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_205 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_206 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_207 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_208 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_209 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_20 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_210 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_211 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_212 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_213 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_214 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_215 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_216 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_217 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_218 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_219 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_21 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_220 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_221 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_222 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_223 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_224 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_225 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_226 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_227 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_228 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_229 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_22 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_230 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_231 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_232 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_233 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_234 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_235 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_236 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_237 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_238 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_239 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_23 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_240 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_241 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_242 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_243 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_244 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_245 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_246 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_247 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_248 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_249 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_24 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_250 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_251 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_252 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_253 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_254 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_255 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_256 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_257 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_258 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_259 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_25 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_260 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_261 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_262 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_263 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_264 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_265 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_266 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_267 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_268 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_269 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_26 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_270 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_271 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_272 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_273 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_274 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_275 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_276 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_277 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_278 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_279 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_27 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_280 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_281 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_282 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_283 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_284 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_285 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_286 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_287 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_288 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_289 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_28 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_290 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_291 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_292 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_293 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_294 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_295 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_296 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_297 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_298 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_299 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_29 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_2 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_300 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_301 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_302 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_303 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_304 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_305 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_306 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_307 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_308 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_309 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_30 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_310 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_311 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_312 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_313 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_314 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_315 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_316 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_317 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_318 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_319 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_31 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_320 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_321 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_322 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_323 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_324 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_325 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_326 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_327 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_328 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_329 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_32 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_330 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_331 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_332 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_333 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_334 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_335 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_336 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_337 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_338 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_339 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_33 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_340 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_341 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_342 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_343 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_344 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_345 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_346 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_347 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_348 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_349 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_34 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_350 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_351 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_352 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_353 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_354 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_355 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_356 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_357 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_358 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_359 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_35 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_360 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_361 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_362 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_363 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_364 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_365 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_366 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_367 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_368 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_369 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_36 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_370 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_371 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_372 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_373 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_374 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_375 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_376 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_377 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_378 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_379 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_37 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_380 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_381 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_382 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_383 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_384 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_385 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_386 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_387 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_388 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_389 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_38 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_390 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_391 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_392 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_393 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_394 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_395 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_396 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_397 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_398 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_399 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_39 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_3 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_400 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_401 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_402 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_403 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_404 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_405 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_406 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_407 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_408 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_409 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_40 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_410 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_411 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_412 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_413 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_414 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_415 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_416 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_417 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_418 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_419 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_41 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_420 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_421 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_422 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_423 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_424 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_425 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_426 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_427 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_428 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_429 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_42 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_430 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_431 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_432 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_433 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_434 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_435 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_436 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_437 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_438 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_439 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_43 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_440 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_441 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_442 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_443 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_444 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_445 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_446 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_447 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_448 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_449 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_44 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_450 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_451 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_452 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_453 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_45 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_46 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_47 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_48 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_49 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_4 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_50 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_51 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_52 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_53 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_54 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_55 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_56 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_57 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_58 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_59 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_5 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_60 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_61 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_62 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_63 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_64 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_65 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_66 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_67 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_68 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_69 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_6 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_70 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_71 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_72 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_73 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_74 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_75 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_76 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_77 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_78 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_79 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_7 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_80 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_81 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_82 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_83 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_84 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_85 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_86 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_87 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_88 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_89 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_8 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_90 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_91 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_92 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_93 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_94 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_95 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_96 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_97 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_98 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_99 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_9 -s 20201005_xenopus_rep3_stage1_withRT/FAO69421_6a3ec67e_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_0 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_100 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_101 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_102 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_103 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_104 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_105 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_106 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_107 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_108 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_109 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_10 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_110 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_111 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_112 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_113 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_114 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_115 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_116 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_117 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_118 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_119 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_11 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_120 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_121 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_122 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_123 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_124 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_125 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_126 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_127 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_128 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_129 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_12 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_130 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_131 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_132 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_133 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_134 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_135 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_136 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_137 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_138 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_139 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_13 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_140 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_141 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_142 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_143 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_144 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_145 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_146 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_147 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_148 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_149 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_14 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_150 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_151 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_152 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_153 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_154 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_155 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_156 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_157 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_158 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_159 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_15 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_160 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_161 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_162 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_163 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_164 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_165 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_166 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_167 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_168 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_169 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_16 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_170 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_171 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_172 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_173 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_174 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_175 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_176 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_177 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_178 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_179 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_17 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_180 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_181 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_182 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_183 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_184 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_185 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_186 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_187 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_188 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_189 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_18 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_190 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_191 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_192 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_193 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_194 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_195 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_196 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_197 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_198 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_199 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_19 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_1 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_200 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_201 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_202 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_203 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_204 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_205 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_206 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_207 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_208 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_209 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_20 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_210 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_211 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_212 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_213 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_214 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_215 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_216 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_217 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_218 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_219 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_21 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_220 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_221 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_222 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_223 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_224 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_225 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_226 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_227 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_228 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_229 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_22 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_230 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_231 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_232 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_233 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_234 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_235 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_236 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_237 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_238 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_239 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_23 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_240 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_241 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_242 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_243 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_244 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_245 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_246 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_247 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_248 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_249 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_24 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_250 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_251 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_252 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_253 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_254 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_255 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_256 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_257 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_258 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_259 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_25 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_260 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_261 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_262 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_263 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_264 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_265 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_266 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_267 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_268 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_269 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_26 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_270 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_271 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_272 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_273 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_274 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_275 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_276 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_277 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_278 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_279 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_27 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_280 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_281 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_282 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_283 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_284 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_285 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_286 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_287 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_288 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_289 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_28 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_290 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_291 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_292 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_293 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_294 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_295 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_296 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_297 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_298 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_299 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_29 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_2 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_300 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_301 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_302 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_303 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_304 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_305 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_306 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_307 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_308 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_309 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_30 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_310 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_311 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_312 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_313 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_314 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_31 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_32 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_33 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_34 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_35 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_36 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_37 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_38 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_39 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_3 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_40 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_41 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_42 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_43 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_44 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_45 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_46 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_47 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_48 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_49 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_4 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_50 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_51 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_52 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_53 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_54 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_55 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_56 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_57 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_58 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_59 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_5 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_60 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_61 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_62 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_63 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_64 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_65 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_66 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_67 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_68 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_69 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_6 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_70 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_71 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_72 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_73 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_74 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_75 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_76 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_77 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_78 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_79 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_7 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_80 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_81 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_82 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_83 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_84 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_85 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_86 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_87 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_88 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_89 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_8 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_90 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_91 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_92 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_93 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_94 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_95 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_96 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_97 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_98 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_99 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_9 -s 20201008_xenopus_rep1_stage28_withRT/FAO85646_e2fba4d2_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_0 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_100 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_101 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_102 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_103 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_104 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_105 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_106 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_107 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_108 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_109 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_10 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_110 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_111 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_112 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_113 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_114 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_115 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_116 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_117 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_118 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_119 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_11 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_120 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_121 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_122 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_123 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_124 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_125 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_126 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_127 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_128 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_129 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_12 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_130 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_131 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_132 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_133 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_134 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_135 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_136 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_137 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_138 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_139 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_13 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_140 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_141 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_142 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_143 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_144 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_145 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_146 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_147 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_148 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_149 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_14 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_150 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_151 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_152 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_153 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_154 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_155 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_156 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_157 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_158 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_159 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_15 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_160 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_161 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_162 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_163 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_164 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_165 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_166 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_167 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_168 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_169 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_16 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_170 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_171 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_172 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_173 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_174 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_175 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_176 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_177 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_178 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_179 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_17 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_180 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_181 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_182 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_183 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_184 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_185 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_186 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_187 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_188 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_189 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_18 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_190 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_191 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_192 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_193 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_194 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_195 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_196 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_197 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_198 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_199 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_19 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_1 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_200 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_201 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_202 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_203 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_204 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_205 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_206 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_207 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_208 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_209 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_20 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_210 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_211 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_212 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_213 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_214 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_215 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_216 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_217 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_218 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_219 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_21 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_220 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_221 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_222 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_223 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_224 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_225 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_226 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_227 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_228 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_229 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_22 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_230 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_231 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_232 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_233 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_234 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_235 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_236 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_237 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_238 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_239 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_23 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_240 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_241 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_242 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_243 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_244 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_245 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_246 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_247 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_248 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_249 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_24 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_250 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_251 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_252 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_253 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_254 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_255 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_256 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_257 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_258 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_259 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_25 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_260 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_261 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_262 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_263 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_264 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_265 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_266 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_267 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_268 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_269 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_26 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_270 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_271 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_272 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_273 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_274 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_275 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_276 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_277 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_278 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_279 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_27 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_280 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_281 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_282 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_283 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_284 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_285 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_286 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_287 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_288 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_289 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_28 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_290 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_291 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_292 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_293 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_294 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_295 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_296 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_297 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_298 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_299 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_29 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_2 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_300 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_301 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_302 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_303 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_304 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_305 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_306 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_307 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_308 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_309 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_30 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_310 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_311 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_312 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_313 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_314 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_315 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_316 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_317 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_318 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_319 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_31 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_320 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_321 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_322 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_323 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_324 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_325 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_326 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_327 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_328 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_329 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_32 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_330 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_331 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_332 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_333 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_334 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_335 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_336 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_337 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_338 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_339 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_33 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_340 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_341 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_342 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_343 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_344 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_345 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_346 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_347 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_348 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_349 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_34 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_350 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_351 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_352 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_353 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_354 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_355 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_356 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_357 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_358 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_359 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_35 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_360 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_361 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_362 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_363 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_364 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_365 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_366 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_367 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_368 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_369 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_36 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_370 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_371 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_372 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_373 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_374 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_375 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_376 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_377 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_378 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_379 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_37 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_380 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_381 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_382 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_383 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_384 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_385 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_386 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_387 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_388 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_389 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_38 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_390 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_391 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_392 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_393 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_394 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_395 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_396 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_397 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_398 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_399 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_39 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_3 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_400 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_401 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_402 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_403 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_404 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_405 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_406 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_407 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_408 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_409 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_40 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_410 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_411 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_412 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_413 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_414 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_415 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_416 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_417 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_418 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_419 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_41 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_420 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_421 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_422 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_423 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_424 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_425 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_426 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_427 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_428 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_429 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_42 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_430 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_431 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_432 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_433 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_434 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_435 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_436 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_437 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_438 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_439 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_43 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_440 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_441 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_442 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_443 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_444 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_445 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_446 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_44 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_45 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_46 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_47 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_48 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_49 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_4 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_50 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_51 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_52 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_53 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_54 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_55 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_56 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_57 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_58 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_59 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_5 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_60 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_61 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_62 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_63 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_64 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_65 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_66 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_67 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_68 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_69 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_6 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_70 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_71 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_72 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_73 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_74 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_75 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_76 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_77 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_78 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_79 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_7 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_80 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_81 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_82 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_83 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_84 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_85 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_86 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_87 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_88 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_89 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_8 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_90 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_91 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_92 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_93 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_94 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_95 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_96 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_97 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_98 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_99 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_9 -s 20201008_xenopus_rep2_stage28_withRT/FAO84304_ad802a8e_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_0 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_100 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_101 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_102 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_103 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_104 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_105 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_106 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_107 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_108 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_109 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_10 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_110 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_111 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_112 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_113 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_114 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_115 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_116 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_117 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_118 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_119 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_11 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_120 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_121 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_122 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_123 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_124 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_125 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_126 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_127 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_128 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_129 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_12 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_130 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_131 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_132 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_133 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_134 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_135 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_136 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_137 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_138 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_139 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_13 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_140 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_141 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_142 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_143 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_144 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_145 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_146 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_147 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_148 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_149 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_14 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_150 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_151 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_152 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_153 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_154 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_155 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_156 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_157 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_158 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_159 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_15 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_160 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_161 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_162 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_163 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_164 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_165 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_166 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_167 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_168 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_169 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_16 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_170 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_171 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_172 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_173 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_174 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_175 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_176 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_177 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_178 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_179 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_17 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_180 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_181 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_182 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_183 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_184 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_185 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_186 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_187 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_188 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_189 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_18 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_190 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_191 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_192 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_193 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_194 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_195 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_196 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_197 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_198 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_199 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_19 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_1 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_200 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_201 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_202 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_203 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_204 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_205 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_206 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_207 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_208 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_209 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_20 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_210 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_211 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_212 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_213 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_214 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_215 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_216 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_217 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_218 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_219 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_21 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_220 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_221 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_222 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_223 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_224 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_225 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_226 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_227 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_228 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_229 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_22 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_230 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_231 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_232 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_233 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_234 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_235 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_236 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_237 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_238 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_239 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_23 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_240 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_241 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_242 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_243 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_244 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_245 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_246 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_247 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_248 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_249 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_24 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_250 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_251 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_252 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_253 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_254 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_255 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_256 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_257 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_258 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_259 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_25 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_260 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_261 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_262 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_263 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_264 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_265 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_266 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_267 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_268 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_269 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_26 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_270 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_271 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_272 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_273 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_274 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_275 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_276 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_277 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_278 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_279 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_27 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_280 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_281 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_282 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_283 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_284 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_285 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_286 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_287 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_288 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_289 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_28 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_290 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_291 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_292 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_293 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_294 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_295 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_296 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_297 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_298 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_299 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_29 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_2 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_300 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_301 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_302 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_303 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_304 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_305 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_306 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_307 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_308 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_309 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_30 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_310 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_311 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_312 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_313 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_314 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_315 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_316 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_317 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_318 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_319 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_31 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_320 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_321 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_322 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_323 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_324 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_325 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_326 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_327 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_328 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_329 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_32 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_330 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_331 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_332 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_333 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_334 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_335 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_336 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_337 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_338 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_339 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_33 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_340 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_341 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_342 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_343 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_344 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_345 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_346 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_347 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_348 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_349 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_34 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_350 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_351 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_352 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_353 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_354 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_355 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_356 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_357 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_358 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_359 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_35 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_360 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_361 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_362 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_363 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_364 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_365 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_366 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_367 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_368 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_369 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_36 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_370 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_371 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_372 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_373 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_374 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_375 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_376 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_377 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_378 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_379 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_37 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_380 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_381 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_382 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_383 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_384 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_385 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_386 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_387 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_388 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_389 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_38 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_390 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_391 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_392 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_393 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_394 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_395 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_396 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_397 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_398 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_399 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_39 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_3 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_400 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_401 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_402 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_403 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_404 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_405 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_406 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_407 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_408 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_409 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_40 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_410 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_411 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_412 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_413 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_414 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_415 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_416 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_417 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_418 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_419 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_41 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_420 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_421 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_422 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_423 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_424 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_425 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_426 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_427 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_428 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_429 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_42 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_430 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_431 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_432 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_433 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_434 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_435 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_436 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_437 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_438 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_439 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_43 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_440 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_441 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_442 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_443 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_444 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_445 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_446 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_447 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_448 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_449 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_44 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_450 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_451 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_452 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_453 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_454 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_454-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_455 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_455-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_456 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_456-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_457 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_457-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_458 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_458-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_459 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_459-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_45 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_460 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_460-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_461 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_461-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_462 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_462-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_463 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_463-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_464 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_464-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_465 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_465-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_466 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_466-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_467 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_467-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_468 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_468-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_469 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_469-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_46 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_470 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_470-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_471 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_471-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_472 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_472-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_473 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_473-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_474 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_474-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_475 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_475-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_476 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_476-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_477 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_477-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_478 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_478-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_479 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_479-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_47 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_480 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_480-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_481 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_481-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_482 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_482-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_483 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_483-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_484 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_484-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_485 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_485-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_486 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_486-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_487 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_487-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_488 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_488-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_489 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_489-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_48 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_490 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_490-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_491 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_491-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_492 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_492-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_493 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_493-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_494 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_494-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_495 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_495-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_496 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_496-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_497 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_497-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_498 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_498-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_499 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_499-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_49 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_4 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_500 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_500-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_501 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_501-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_502 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_502-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_503 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_503-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_504 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_504-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_505 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_505-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_506 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_506-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_507 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_507-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_508 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_508-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_509 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_509-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_50 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_510 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_510-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_511 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_511-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_512 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_512-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_513 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_513-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_514 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_514-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_515 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_515-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_516 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_516-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_517 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_517-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_518 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_518-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_519 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_519-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_51 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_52 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_53 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_54 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_55 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_56 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_57 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_58 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_59 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_5 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_60 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_61 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_62 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_63 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_64 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_65 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_66 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_67 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_68 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_69 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_6 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_70 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_71 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_72 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_73 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_74 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_75 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_76 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_77 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_78 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_79 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_7 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_80 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_81 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_82 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_83 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_84 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_85 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_86 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_87 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_88 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_89 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_8 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_90 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_91 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_92 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_93 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_94 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_95 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_96 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_97 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_98 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_99 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_9 -s 20201008_xenopus_rep3_stage28_withRT/FAO85593_ac444b79_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_0 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_100 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_101 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_102 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_103 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_104 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_105 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_106 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_107 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_108 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_109 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_10 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_110 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_111 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_112 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_113 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_114 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_115 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_116 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_117 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_118 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_119 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_11 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_120 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_121 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_122 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_123 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_124 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_125 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_126 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_127 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_128 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_129 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_12 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_130 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_131 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_132 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_133 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_134 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_135 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_136 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_137 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_138 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_139 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_13 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_140 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_141 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_142 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_143 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_144 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_145 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_146 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_147 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_148 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_149 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_14 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_150 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_151 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_152 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_153 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_154 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_155 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_156 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_157 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_158 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_159 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_15 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_160 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_161 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_162 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_163 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_164 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_165 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_166 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_167 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_168 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_169 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_16 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_170 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_171 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_172 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_173 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_174 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_175 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_176 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_177 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_178 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_179 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_17 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_180 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_181 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_182 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_183 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_184 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_185 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_186 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_187 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_188 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_189 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_18 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_190 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_191 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_192 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_193 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_194 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_195 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_196 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_197 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_198 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_199 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_19 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_1 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_200 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_201 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_202 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_203 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_204 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_205 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_206 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_207 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_208 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_209 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_20 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_210 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_211 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_212 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_213 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_214 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_215 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_216 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_217 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_218 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_219 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_21 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_220 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_221 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_222 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_223 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_224 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_225 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_226 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_227 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_228 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_229 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_22 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_230 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_231 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_232 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_233 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_234 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_235 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_236 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_237 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_238 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_239 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_23 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_240 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_241 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_242 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_243 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_244 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_245 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_246 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_247 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_248 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_249 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_24 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_250 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_251 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_252 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_253 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_254 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_255 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_256 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_257 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_258 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_259 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_25 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_260 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_261 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_262 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_263 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_264 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_265 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_266 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_267 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_268 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_269 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_26 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_270 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_271 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_272 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_273 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_274 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_275 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_276 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_277 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_278 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_279 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_27 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_280 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_281 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_282 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_283 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_284 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_285 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_286 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_287 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_288 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_289 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_28 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_290 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_291 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_292 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_293 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_294 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_295 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_296 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_297 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_298 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_299 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_29 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_2 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_300 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_301 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_302 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_303 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_304 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_305 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_306 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_307 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_308 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_309 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_30 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_310 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_311 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_312 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_31 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_32 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_33 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_34 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_35 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_36 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_37 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_38 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_39 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_3 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_40 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_41 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_42 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_43 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_44 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_45 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_46 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_47 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_48 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_49 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_4 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_50 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_51 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_52 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_53 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_54 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_55 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_56 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_57 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_58 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_59 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_5 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_60 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_61 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_62 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_63 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_64 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_65 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_66 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_67 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_68 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_69 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_6 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_70 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_71 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_72 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_73 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_74 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_75 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_76 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_77 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_78 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_79 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_7 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_80 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_81 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_82 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_83 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_84 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_85 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_86 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_87 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_88 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_89 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_8 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_90 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_91 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_92 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_93 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_94 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_95 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_96 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_97 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_98 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_99 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_9 -s 20201008_xenopus_rep3_stage9_withRT/FAO84791_858e230c_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_0 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_10 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_11 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_12 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_13 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_14 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_15 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_16 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_17 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_18 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_19 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_1 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_20 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_21 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_22 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_23 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_24 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_25 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_26 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_27 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_28 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_29 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_2 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_30 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_31 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_32 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_33 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_34 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_35 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_36 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_37 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_38 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_39 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_3 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_40 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_41 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_42 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_43 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_44 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_45 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_46 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_47 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_48 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_49 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_4 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_50 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_51 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_52 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_53 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_54 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_55 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_56 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_57 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_58 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_59 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_5 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_60 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_61 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_62 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_63 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_6 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_7 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_8 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_9 -s 20210108_mouse_brain_682_4_withRT/FAO72392_9e644160_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_0 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_100 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_101 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_102 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_103 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_104 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_105 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_106 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_107 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_108 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_109 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_10 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_110 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_111 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_112 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_113 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_114 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_115 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_116 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_117 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_118 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_119 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_11 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_120 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_121 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_122 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_123 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_124 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_125 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_126 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_127 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_128 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_129 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_12 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_130 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_131 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_132 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_133 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_134 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_135 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_136 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_137 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_138 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_139 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_13 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_140 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_141 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_142 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_143 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_144 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_145 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_146 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_147 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_148 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_149 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_14 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_150 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_151 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_152 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_153 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_154 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_155 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_156 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_157 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_158 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_159 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_15 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_160 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_161 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_162 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_163 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_164 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_165 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_166 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_167 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_168 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_169 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_16 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_170 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_171 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_172 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_173 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_174 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_175 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_176 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_177 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_178 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_179 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_17 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_180 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_181 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_182 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_183 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_184 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_185 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_186 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_187 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_188 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_189 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_18 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_19 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_1 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_20 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_21 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_22 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_23 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_24 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_25 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_26 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_27 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_28 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_29 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_2 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_30 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_31 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_32 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_33 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_34 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_35 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_36 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_37 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_38 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_39 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_3 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_40 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_41 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_42 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_43 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_44 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_45 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_46 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_47 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_48 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_49 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_4 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_50 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_51 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_52 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_53 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_54 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_55 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_56 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_57 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_58 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_59 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_5 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_60 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_61 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_62 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_63 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_64 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_65 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_66 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_67 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_68 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_69 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_6 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_70 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_71 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_72 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_73 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_74 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_75 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_76 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_77 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_78 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_79 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_7 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_80 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_81 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_82 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_83 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_84 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_85 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_86 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_87 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_88 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_89 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_8 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_90 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_91 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_92 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_93 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_94 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_95 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_96 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_97 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_98 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_99 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210203_HCT116_7_withRT/FAP27557_266d2189_9 -s 20210203_HCT116_7_withRT/FAP27557_266d2189_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_0 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_100 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_101 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_102 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_103 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_104 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_105 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_106 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_107 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_108 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_109 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_10 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_110 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_111 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_112 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_113 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_114 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_115 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_116 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_117 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_118 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_119 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_11 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_120 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_121 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_122 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_123 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_124 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_125 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_126 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_127 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_128 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_129 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_12 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_130 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_131 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_132 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_133 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_134 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_135 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_13 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_14 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_15 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_16 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_17 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_18 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_19 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_1 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_20 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_21 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_22 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_23 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_24 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_25 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_26 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_27 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_28 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_29 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_2 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_30 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_31 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_32 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_33 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_34 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_35 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_36 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_37 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_38 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_39 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_3 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_40 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_41 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_42 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_43 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_44 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_45 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_46 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_47 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_48 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_49 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_4 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_50 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_51 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_52 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_53 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_54 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_55 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_56 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_57 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_58 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_59 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_5 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_60 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_61 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_62 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_63 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_64 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_65 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_66 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_67 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_68 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_69 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_6 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_70 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_71 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_72 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_73 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_74 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_75 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_76 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_77 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_78 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_79 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_7 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_80 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_81 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_82 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_83 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_84 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_85 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_86 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_87 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_88 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_89 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_8 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_90 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_91 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_92 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_93 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_94 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_95 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_96 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_97 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_98 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_99 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_9 -s 20210205_HCT116_8_1_withRT/FAP27828_fedd211e_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_0 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_10 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_11 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_12 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_13 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_14 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_15 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_16 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_17 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_18 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_19 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_1 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_20 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_21 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_22 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_23 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_24 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_25 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_26 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_27 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_28 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_29 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_2 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_30 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_31 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_32 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_33 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_34 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_35 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_36 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_37 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_38 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_39 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_3 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_40 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_41 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_42 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_43 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_44 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_45 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_46 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_47 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_48 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_49 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_4 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_50 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_51 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_52 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_53 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_54 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_55 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_56 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_57 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_58 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_59 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_5 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_60 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_61 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_62 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_63 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_64 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_65 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_66 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_67 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_68 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_69 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_6 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_70 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_71 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_72 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_73 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_74 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_75 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_76 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_77 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_78 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_79 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_7 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_80 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_81 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_82 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_83 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_84 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_85 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_86 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_8 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_7_withRT/FAP27960_c37945a8_9 -s 20210324_HCT116_7_withRT/FAP27960_c37945a8_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_0 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_1 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_2 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_3 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_4 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_5 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_6 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_7 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_8 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_9 -s 20210324_HCT116_8_withRT/FAP23862_9c5d9f75_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_0 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_10 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_11 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_12 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_13 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_14 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_15 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_16 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_17 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_18 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_19 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_1 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_20 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_21 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_22 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_23 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_24 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_25 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_26 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_27 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_28 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_29 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_2 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_30 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_31 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_32 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_33 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_34 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_35 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_36 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_37 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_38 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_39 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_3 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_40 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_41 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_42 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_43 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_44 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_45 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_46 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_47 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_48 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_49 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_4 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_50 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_51 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_52 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_53 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_54 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_55 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_56 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_57 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_58 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_59 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_5 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_60 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_61 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_62 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_63 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_64 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_65 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_66 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_67 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_68 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_69 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_6 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_70 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_71 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_72 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_73 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_74 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_75 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_76 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_77 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_78 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_79 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_7 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_80 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_81 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_82 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_83 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_84 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_85 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_86 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_87 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_88 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_89 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_8 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_90 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_91 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_92 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_93 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_94 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_95 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_7_withRT/FAP27350_cba8b601_9 -s 20210325_HCT116_7_withRT/FAP27350_cba8b601_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_0 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_100 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_101 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_102 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_103 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_104 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_105 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_106 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_107 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_108 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_109 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_10 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_11 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_12 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_13 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_14 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_15 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_16 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_17 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_18 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_19 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_1 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_20 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_21 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_22 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_23 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_24 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_25 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_26 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_27 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_28 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_29 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_2 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_30 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_31 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_32 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_33 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_34 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_35 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_36 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_37 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_38 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_39 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_3 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_40 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_41 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_42 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_43 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_44 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_45 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_46 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_47 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_48 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_49 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_4 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_50 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_51 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_52 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_53 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_54 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_55 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_56 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_57 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_58 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_59 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_5 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_60 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_61 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_62 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_63 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_64 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_65 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_66 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_67 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_68 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_69 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_6 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_70 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_71 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_72 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_73 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_74 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_75 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_76 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_77 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_78 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_79 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_7 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_80 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_81 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_82 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_83 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_84 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_85 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_86 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_87 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_88 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_89 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_8 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_90 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_91 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_92 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_93 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_94 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_95 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_96 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_97 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_98 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_99 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210325_HCT116_8_withRT/FAO84333_f7da4271_9 -s 20210325_HCT116_8_withRT/FAO84333_f7da4271_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_0 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_10 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_11 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_12 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_13 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_14 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_15 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_16 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_17 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_18 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_19 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_1 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_20 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_21 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_22 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_23 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_24 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_25 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_26 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_27 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_28 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_29 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_2 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_30 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_31 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_32 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_3 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_4 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_5 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_6 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_7 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_8 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_9 -s 20210326_HCT116_8_1_withRT/FAO84333_6bd5a179_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_0 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_100 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_101 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_102 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_103 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_104 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_10 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_11 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_12 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_13 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_14 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_15 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_16 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_17 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_18 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_19 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_1 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_20 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_21 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_22 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_23 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_24 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_25 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_26 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_27 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_28 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_29 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_2 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_30 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_31 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_32 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_33 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_34 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_35 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_36 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_37 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_38 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_39 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_3 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_40 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_41 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_42 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_43 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_44 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_45 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_46 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_47 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_48 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_49 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_4 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_50 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_51 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_52 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_53 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_54 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_55 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_56 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_57 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_58 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_59 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_5 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_60 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_61 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_62 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_63 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_64 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_65 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_66 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_67 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_68 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_69 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_6 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_70 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_71 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_72 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_73 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_74 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_75 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_76 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_77 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_78 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_79 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_7 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_80 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_81 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_82 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_83 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_84 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_85 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_86 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_87 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_88 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_89 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_8 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_90 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_91 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_92 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_93 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_94 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_95 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_96 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_97 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_98 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_99 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_9 -s 20210326_HCT116_8_2_withRT/FAP27611_f86bd5aa_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_0 -s 20210629_hct116_8_withRT/FAP27509_427d9786_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_10 -s 20210629_hct116_8_withRT/FAP27509_427d9786_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_11 -s 20210629_hct116_8_withRT/FAP27509_427d9786_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_12 -s 20210629_hct116_8_withRT/FAP27509_427d9786_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_13 -s 20210629_hct116_8_withRT/FAP27509_427d9786_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_14 -s 20210629_hct116_8_withRT/FAP27509_427d9786_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_15 -s 20210629_hct116_8_withRT/FAP27509_427d9786_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_16 -s 20210629_hct116_8_withRT/FAP27509_427d9786_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_17 -s 20210629_hct116_8_withRT/FAP27509_427d9786_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_18 -s 20210629_hct116_8_withRT/FAP27509_427d9786_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_19 -s 20210629_hct116_8_withRT/FAP27509_427d9786_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_1 -s 20210629_hct116_8_withRT/FAP27509_427d9786_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_20 -s 20210629_hct116_8_withRT/FAP27509_427d9786_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_21 -s 20210629_hct116_8_withRT/FAP27509_427d9786_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_22 -s 20210629_hct116_8_withRT/FAP27509_427d9786_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_23 -s 20210629_hct116_8_withRT/FAP27509_427d9786_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_24 -s 20210629_hct116_8_withRT/FAP27509_427d9786_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_25 -s 20210629_hct116_8_withRT/FAP27509_427d9786_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_26 -s 20210629_hct116_8_withRT/FAP27509_427d9786_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_27 -s 20210629_hct116_8_withRT/FAP27509_427d9786_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_28 -s 20210629_hct116_8_withRT/FAP27509_427d9786_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_29 -s 20210629_hct116_8_withRT/FAP27509_427d9786_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_2 -s 20210629_hct116_8_withRT/FAP27509_427d9786_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_30 -s 20210629_hct116_8_withRT/FAP27509_427d9786_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_31 -s 20210629_hct116_8_withRT/FAP27509_427d9786_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_32 -s 20210629_hct116_8_withRT/FAP27509_427d9786_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_33 -s 20210629_hct116_8_withRT/FAP27509_427d9786_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_34 -s 20210629_hct116_8_withRT/FAP27509_427d9786_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_35 -s 20210629_hct116_8_withRT/FAP27509_427d9786_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_36 -s 20210629_hct116_8_withRT/FAP27509_427d9786_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_37 -s 20210629_hct116_8_withRT/FAP27509_427d9786_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_38 -s 20210629_hct116_8_withRT/FAP27509_427d9786_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_39 -s 20210629_hct116_8_withRT/FAP27509_427d9786_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_3 -s 20210629_hct116_8_withRT/FAP27509_427d9786_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_40 -s 20210629_hct116_8_withRT/FAP27509_427d9786_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_41 -s 20210629_hct116_8_withRT/FAP27509_427d9786_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_42 -s 20210629_hct116_8_withRT/FAP27509_427d9786_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_43 -s 20210629_hct116_8_withRT/FAP27509_427d9786_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_44 -s 20210629_hct116_8_withRT/FAP27509_427d9786_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_45 -s 20210629_hct116_8_withRT/FAP27509_427d9786_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_46 -s 20210629_hct116_8_withRT/FAP27509_427d9786_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_47 -s 20210629_hct116_8_withRT/FAP27509_427d9786_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_48 -s 20210629_hct116_8_withRT/FAP27509_427d9786_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_49 -s 20210629_hct116_8_withRT/FAP27509_427d9786_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_4 -s 20210629_hct116_8_withRT/FAP27509_427d9786_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_50 -s 20210629_hct116_8_withRT/FAP27509_427d9786_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_51 -s 20210629_hct116_8_withRT/FAP27509_427d9786_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_52 -s 20210629_hct116_8_withRT/FAP27509_427d9786_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_53 -s 20210629_hct116_8_withRT/FAP27509_427d9786_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_54 -s 20210629_hct116_8_withRT/FAP27509_427d9786_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_55 -s 20210629_hct116_8_withRT/FAP27509_427d9786_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_5 -s 20210629_hct116_8_withRT/FAP27509_427d9786_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_6 -s 20210629_hct116_8_withRT/FAP27509_427d9786_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_7 -s 20210629_hct116_8_withRT/FAP27509_427d9786_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_8 -s 20210629_hct116_8_withRT/FAP27509_427d9786_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210629_hct116_8_withRT/FAP27509_427d9786_9 -s 20210629_hct116_8_withRT/FAP27509_427d9786_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_0 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_10 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_11 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_12 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_13 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_14 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_15 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_16 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_17 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_18 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_19 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_1 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_20 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_21 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_22 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_23 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_24 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_25 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_26 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_27 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_28 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_29 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_2 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_30 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_31 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_32 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_33 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_34 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_35 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_36 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_37 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_38 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_39 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_3 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_40 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_41 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_42 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_43 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_44 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_45 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_46 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_47 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_48 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_49 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_4 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_50 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_51 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_52 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_53 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_54 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_55 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_56 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_57 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_58 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_59 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_5 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_60 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_61 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_62 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_63 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_64 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_65 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_66 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_67 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_68 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_69 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_6 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_70 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_71 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_72 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_73 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_74 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_75 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_76 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_77 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_78 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_79 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_7 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_80 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_81 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_82 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_83 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_84 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_85 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_86 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_87 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_88 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_89 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_8 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_90 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_91 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_92 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_93 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_94 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_95 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_96 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_97 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_98 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_99 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_9 -s 20210707_hct116_8_withRT/FAP23827_7ffe9c8f_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_0 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_100 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_101 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_102 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_103 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_104 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_105 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_106 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_107 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_108 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_109 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_10 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_110 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_111 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_112 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_113 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_114 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_115 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_116 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_117 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_118 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_119 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_11 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_120 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_121 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_122 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_123 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_124 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_125 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_12 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_13 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_14 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_15 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_16 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_17 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_18 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_19 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_1 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_20 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_21 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_22 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_23 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_24 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_25 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_26 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_27 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_28 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_29 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_2 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_30 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_31 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_32 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_33 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_34 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_35 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_36 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_37 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_38 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_39 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_3 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_40 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_41 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_42 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_43 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_44 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_45 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_46 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_47 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_48 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_49 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_4 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_50 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_51 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_52 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_53 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_54 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_55 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_56 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_57 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_58 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_59 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_5 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_60 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_61 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_62 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_63 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_64 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_65 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_66 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_67 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_68 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_69 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_6 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_70 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_71 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_72 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_73 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_74 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_75 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_76 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_77 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_78 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_79 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_7 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_80 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_81 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_82 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_83 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_84 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_85 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_86 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_87 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_88 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_89 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_8 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_90 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_91 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_92 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_93 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_94 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_95 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_96 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_97 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_98 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_99 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT/FAP27789_ad9907f1_9 -s 20210712_hct116_8_withRT/FAP27789_ad9907f1_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_0 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_10 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_11 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_12 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_13 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_14 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_15 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_16 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_17 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_18 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_19 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_1 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_20 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_21 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_22 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_23 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_24 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_25 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_26 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_27 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_28 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_29 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_2 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_30 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_31 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_32 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_33 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_34 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_35 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_36 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_37 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_38 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_39 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_3 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_40 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_41 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_42 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_43 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_44 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_45 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_46 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_47 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_48 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_49 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_4 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_50 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_51 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_52 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_53 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_54 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_55 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_56 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_57 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_58 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_59 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_5 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_60 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_61 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_62 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_63 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_64 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_65 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_66 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_67 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_68 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_69 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_6 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_70 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_71 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_72 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_73 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_74 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_75 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_76 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_77 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_78 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_79 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_7 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_80 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_81 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_82 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_83 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_84 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_85 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_86 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_87 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_88 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_89 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_8 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_262b5641_9 -s 20210712_hct116_8_withRT_2/FAP95366_262b5641_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_0 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_10 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_11 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_12 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_13 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_1 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_2 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_3 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_4 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_5 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_6 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_7 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_8 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_9 -s 20210712_hct116_8_withRT_2/FAP95366_c52d25c7_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_0 -s 20210721_hct116_8_withRT/FAP95853_080725c4_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_10 -s 20210721_hct116_8_withRT/FAP95853_080725c4_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_11 -s 20210721_hct116_8_withRT/FAP95853_080725c4_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_12 -s 20210721_hct116_8_withRT/FAP95853_080725c4_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_13 -s 20210721_hct116_8_withRT/FAP95853_080725c4_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_14 -s 20210721_hct116_8_withRT/FAP95853_080725c4_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_15 -s 20210721_hct116_8_withRT/FAP95853_080725c4_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_16 -s 20210721_hct116_8_withRT/FAP95853_080725c4_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_17 -s 20210721_hct116_8_withRT/FAP95853_080725c4_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_18 -s 20210721_hct116_8_withRT/FAP95853_080725c4_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_19 -s 20210721_hct116_8_withRT/FAP95853_080725c4_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_1 -s 20210721_hct116_8_withRT/FAP95853_080725c4_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_20 -s 20210721_hct116_8_withRT/FAP95853_080725c4_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_21 -s 20210721_hct116_8_withRT/FAP95853_080725c4_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_22 -s 20210721_hct116_8_withRT/FAP95853_080725c4_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_23 -s 20210721_hct116_8_withRT/FAP95853_080725c4_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_24 -s 20210721_hct116_8_withRT/FAP95853_080725c4_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_25 -s 20210721_hct116_8_withRT/FAP95853_080725c4_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_26 -s 20210721_hct116_8_withRT/FAP95853_080725c4_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_27 -s 20210721_hct116_8_withRT/FAP95853_080725c4_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_28 -s 20210721_hct116_8_withRT/FAP95853_080725c4_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_29 -s 20210721_hct116_8_withRT/FAP95853_080725c4_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_2 -s 20210721_hct116_8_withRT/FAP95853_080725c4_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_30 -s 20210721_hct116_8_withRT/FAP95853_080725c4_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_31 -s 20210721_hct116_8_withRT/FAP95853_080725c4_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_32 -s 20210721_hct116_8_withRT/FAP95853_080725c4_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_33 -s 20210721_hct116_8_withRT/FAP95853_080725c4_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_34 -s 20210721_hct116_8_withRT/FAP95853_080725c4_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_35 -s 20210721_hct116_8_withRT/FAP95853_080725c4_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_36 -s 20210721_hct116_8_withRT/FAP95853_080725c4_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_37 -s 20210721_hct116_8_withRT/FAP95853_080725c4_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_38 -s 20210721_hct116_8_withRT/FAP95853_080725c4_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_39 -s 20210721_hct116_8_withRT/FAP95853_080725c4_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_3 -s 20210721_hct116_8_withRT/FAP95853_080725c4_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_40 -s 20210721_hct116_8_withRT/FAP95853_080725c4_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_41 -s 20210721_hct116_8_withRT/FAP95853_080725c4_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_42 -s 20210721_hct116_8_withRT/FAP95853_080725c4_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_43 -s 20210721_hct116_8_withRT/FAP95853_080725c4_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_44 -s 20210721_hct116_8_withRT/FAP95853_080725c4_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_45 -s 20210721_hct116_8_withRT/FAP95853_080725c4_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_46 -s 20210721_hct116_8_withRT/FAP95853_080725c4_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_47 -s 20210721_hct116_8_withRT/FAP95853_080725c4_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_48 -s 20210721_hct116_8_withRT/FAP95853_080725c4_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_49 -s 20210721_hct116_8_withRT/FAP95853_080725c4_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_4 -s 20210721_hct116_8_withRT/FAP95853_080725c4_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_50 -s 20210721_hct116_8_withRT/FAP95853_080725c4_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_51 -s 20210721_hct116_8_withRT/FAP95853_080725c4_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_52 -s 20210721_hct116_8_withRT/FAP95853_080725c4_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_53 -s 20210721_hct116_8_withRT/FAP95853_080725c4_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_54 -s 20210721_hct116_8_withRT/FAP95853_080725c4_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_55 -s 20210721_hct116_8_withRT/FAP95853_080725c4_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_56 -s 20210721_hct116_8_withRT/FAP95853_080725c4_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_5 -s 20210721_hct116_8_withRT/FAP95853_080725c4_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_6 -s 20210721_hct116_8_withRT/FAP95853_080725c4_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_7 -s 20210721_hct116_8_withRT/FAP95853_080725c4_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_8 -s 20210721_hct116_8_withRT/FAP95853_080725c4_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210721_hct116_8_withRT/FAP95853_080725c4_9 -s 20210721_hct116_8_withRT/FAP95853_080725c4_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_0 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_100 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_101 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_102 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_103 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_104 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_105 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_106 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_107 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_108 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_109 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_10 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_110 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_111 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_112 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_113 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_114 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_115 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_116 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_117 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_118 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_119 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_11 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_120 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_121 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_122 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_123 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_124 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_125 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_126 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_127 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_128 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_129 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_12 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_130 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_131 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_132 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_133 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_134 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_135 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_136 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_137 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_138 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_139 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_13 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_140 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_141 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_142 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_143 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_144 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_145 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_146 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_147 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_148 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_149 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_14 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_150 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_151 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_152 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_153 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_154 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_155 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_156 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_157 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_158 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_159 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_15 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_160 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_161 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_162 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_163 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_164 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_165 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_166 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_167 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_168 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_169 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_16 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_170 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_171 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_172 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_173 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_174 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_175 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_176 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_177 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_178 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_179 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_17 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_180 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_181 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_182 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_183 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_184 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_185 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_186 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_187 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_188 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_189 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_18 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_190 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_191 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_192 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_193 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_194 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_195 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_196 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_19 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_1 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_20 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_21 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_22 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_23 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_24 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_25 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_26 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_27 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_28 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_29 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_2 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_30 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_31 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_32 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_33 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_34 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_35 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_36 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_37 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_38 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_39 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_3 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_40 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_41 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_42 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_43 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_44 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_45 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_46 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_47 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_48 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_49 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_4 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_50 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_51 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_52 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_53 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_54 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_55 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_56 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_57 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_58 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_59 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_5 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_60 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_61 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_62 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_63 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_64 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_65 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_66 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_67 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_68 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_69 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_6 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_70 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_71 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_72 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_73 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_74 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_75 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_76 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_77 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_78 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_79 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_7 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_80 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_81 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_82 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_83 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_84 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_85 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_86 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_87 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_88 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_89 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_8 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_90 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_91 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_92 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_93 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_94 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_95 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_96 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_97 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_98 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_99 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i 20210805_hct116_8_withRT/FAP75938_ce80fd74_9 -s 20210805_hct116_8_withRT/FAP75938_ce80fd74_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none